Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | BA893_RS14355 | Genome accession | NZ_CP016349 |
| Coordinates | 3146878..3147471 (-) | Length | 197 a.a. |
| NCBI ID | WP_065300287.1 | Uniprot ID | - |
| Organism | Vibrio natriegens strain CCUG 16373 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3141878..3152471
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BA893_RS14335 (BA893_14335) | aroB | 3142496..3143596 (-) | 1101 | WP_065300285.1 | 3-dehydroquinate synthase | - |
| BA893_RS14340 (BA893_14340) | aroK | 3143628..3144146 (-) | 519 | WP_014233147.1 | shikimate kinase AroK | - |
| BA893_RS14345 (BA893_14345) | pilQ | 3144335..3146038 (-) | 1704 | WP_014233148.1 | type IV pilus secretin PilQ | Machinery gene |
| BA893_RS14350 (BA893_14350) | pilP | 3146373..3146888 (-) | 516 | WP_065300286.1 | pilus assembly protein PilP | Machinery gene |
| BA893_RS14355 (BA893_14355) | pilO | 3146878..3147471 (-) | 594 | WP_065300287.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| BA893_RS14360 (BA893_14360) | pilN | 3147464..3148039 (-) | 576 | WP_065300288.1 | PilN domain-containing protein | Machinery gene |
| BA893_RS14365 (BA893_14365) | pilM | 3148023..3149039 (-) | 1017 | WP_065300289.1 | type IV pilus biogenesis protein PilM | Machinery gene |
| BA893_RS14370 (BA893_14370) | - | 3149183..3151750 (+) | 2568 | WP_065300290.1 | penicillin-binding protein 1A | - |
Sequence
Protein
Download Length: 197 a.a. Molecular weight: 23054.55 Da Isoelectric Point: 4.7130
>NTDB_id=187226 BA893_RS14355 WP_065300287.1 3146878..3147471(-) (pilO) [Vibrio natriegens strain CCUG 16373]
MVNWQDLEMDEIAEWPLIPQLLVISLLILLLQGVGYWLYLVPKEERLNDLIQQEETLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSDHFLYQLPLNIELTGDFHDIGRFSQAIATLPRII
TFQDVTWQRVSQESETLHFRVRAHTYQFKPEEKKDEK
MVNWQDLEMDEIAEWPLIPQLLVISLLILLLQGVGYWLYLVPKEERLNDLIQQEETLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSDHFLYQLPLNIELTGDFHDIGRFSQAIATLPRII
TFQDVTWQRVSQESETLHFRVRAHTYQFKPEEKKDEK
Nucleotide
Download Length: 594 bp
>NTDB_id=187226 BA893_RS14355 WP_065300287.1 3146878..3147471(-) (pilO) [Vibrio natriegens strain CCUG 16373]
ATGGTTAATTGGCAAGATCTGGAAATGGATGAGATTGCTGAGTGGCCTTTAATCCCTCAGTTGCTAGTCATTAGTTTGTT
GATCCTGTTGCTCCAAGGTGTCGGCTATTGGCTTTACTTGGTGCCTAAGGAAGAGCGATTAAATGACCTCATCCAGCAGG
AAGAAACACTTAAAGTTGCGTTACGAATTAAAGCCAATAAGGTTGCCGCATTGCCGCAGCTCCAATCTCAGTTAGATGAA
TTGACTACACGTTACGAGTTGTTGTTGCAGCAATTACCCGCCCAGAAAGAGTTAGCCACCATGCTGGCGTCCGTCAATGA
GCTCGGCATAGACAATAAACTGACCTTCACGCGCATTGACTGGGGAGAAAAGCAGTCTGATCACTTTTTGTATCAGCTGC
CACTTAACATCGAGTTAACCGGTGATTTTCATGACATCGGCCGTTTCTCACAAGCGATTGCAACTTTACCTCGCATCATC
ACTTTTCAAGATGTGACTTGGCAACGCGTCAGTCAGGAGAGTGAAACGCTGCACTTCCGGGTAAGAGCACACACCTATCA
GTTCAAGCCAGAGGAAAAGAAAGATGAAAAATAA
ATGGTTAATTGGCAAGATCTGGAAATGGATGAGATTGCTGAGTGGCCTTTAATCCCTCAGTTGCTAGTCATTAGTTTGTT
GATCCTGTTGCTCCAAGGTGTCGGCTATTGGCTTTACTTGGTGCCTAAGGAAGAGCGATTAAATGACCTCATCCAGCAGG
AAGAAACACTTAAAGTTGCGTTACGAATTAAAGCCAATAAGGTTGCCGCATTGCCGCAGCTCCAATCTCAGTTAGATGAA
TTGACTACACGTTACGAGTTGTTGTTGCAGCAATTACCCGCCCAGAAAGAGTTAGCCACCATGCTGGCGTCCGTCAATGA
GCTCGGCATAGACAATAAACTGACCTTCACGCGCATTGACTGGGGAGAAAAGCAGTCTGATCACTTTTTGTATCAGCTGC
CACTTAACATCGAGTTAACCGGTGATTTTCATGACATCGGCCGTTTCTCACAAGCGATTGCAACTTTACCTCGCATCATC
ACTTTTCAAGATGTGACTTGGCAACGCGTCAGTCAGGAGAGTGAAACGCTGCACTTCCGGGTAAGAGCACACACCTATCA
GTTCAAGCCAGAGGAAAAGAAAGATGAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio campbellii strain DS40M4 |
88.421 |
96.447 |
0.853 |
| pilO | Vibrio cholerae strain A1552 |
70.558 |
100 |
0.706 |