Detailed information NTG0186940

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: BBB50_RS11890
• Genome accession: NZ_CP016324
• Coordinates: 2574287..2575294 (-)
• Length: 335 a.a.
• NCBI ID: WP_000116737.1
• Uniprot ID: O51804
• Organism: Vibrio cholerae 2740-80
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2569287..2580294

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BBB50_RS11880 (BBB50_11880)	cysM	2570451..2571338 (+)	888	WP_001279365.1	cysteine synthase CysM	-
BBB50_RS11885 (BBB50_11885)	mutS	2571606..2574194 (+)	2589	WP_001895515.1	DNA mismatch repair protein MutS	-
BBB50_RS11890 (BBB50_11890)	rpoS	2574287..2575294 (-)	1008	WP_000116737.1	RNA polymerase sigma factor RpoS	Regulator
BBB50_RS11895 (BBB50_11895)	nlpD	2575368..2576303 (-)	936	WP_000177568.1	murein hydrolase activator NlpD	-
BBB50_RS11900 (BBB50_11900)	-	2576303..2576929 (-)	627	WP_000002982.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
BBB50_RS11905 (BBB50_11905)	surE	2576922..2577674 (-)	753	WP_000698379.1	5'/3'-nucleotidase SurE	-
BBB50_RS11910 (BBB50_11910)	truD	2577676..2578761 (-)	1086	WP_000129752.1	tRNA pseudouridine(13) synthase TruD	-
BBB50_RS11915 (BBB50_11915)	ispF	2578791..2579267 (-)	477	WP_000619209.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
BBB50_RS11920 (BBB50_11920)	ispD	2579264..2579962 (-)	699	WP_001061952.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
BBB50_RS11925 (BBB50_11925)	ftsB	2579959..2580243 (-)	285	WP_001263189.1	cell division protein FtsB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38534.39 Da
• Isoelectric Point: 4.3648

>NTDB_id=186940 BBB50_RS11890 WP_000116737.1 2574287..2575294(-) (rpoS) [Vibrio cholerae 2740-80]
MSVSNTVTKVEEFDFEDEALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=186940 BBB50_RS11890 WP_000116737.1 2574287..2575294(-) (rpoS) [Vibrio cholerae 2740-80]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCACCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACACCAGAAGAAATTGCTCTTGAGTTAGACCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGGGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCGCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (263-316)

• Sigma-70 region 3 (Sigma70_r3) (175-249)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

3D structure

• AlphaFold DB: O51804

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	100	100	1