Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   BA022_RS11150 Genome accession   NZ_CP016278
Coordinates   2377026..2378243 (+) Length   405 a.a.
NCBI ID   WP_088887536.1    Uniprot ID   -
Organism   Diaphorobacter nitroreducens strain SL-205     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2372026..2383243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BA022_RS11125 (BA022_10870) rpmA 2373198..2373455 (-) 258 WP_011804286.1 50S ribosomal protein L27 -
  BA022_RS11130 (BA022_10875) rplU 2373473..2373784 (-) 312 WP_012655753.1 50S ribosomal protein L21 -
  BA022_RS11135 (BA022_10880) - 2373954..2374937 (+) 984 WP_187305962.1 polyprenyl synthetase family protein -
  BA022_RS11145 (BA022_10890) pilB 2375272..2377005 (+) 1734 WP_088887535.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BA022_RS11150 (BA022_10895) pilC 2377026..2378243 (+) 1218 WP_088887536.1 type II secretion system F family protein Machinery gene
  BA022_RS11155 (BA022_10900) - 2378243..2379124 (+) 882 WP_088887537.1 prepilin peptidase -
  BA022_RS11160 (BA022_10905) coaE 2379156..2379749 (+) 594 WP_228403569.1 dephospho-CoA kinase -
  BA022_RS11165 (BA022_10910) zapD 2379840..2380595 (+) 756 WP_012655747.1 cell division protein ZapD -
  BA022_RS11170 (BA022_10915) - 2380602..2380832 (+) 231 WP_011804249.1 DNA gyrase inhibitor YacG -
  BA022_RS11175 (BA022_10920) - 2380901..2381347 (-) 447 WP_088887539.1 NUDIX domain-containing protein -
  BA022_RS11180 (BA022_10925) - 2381344..2382222 (-) 879 WP_012655745.1 ATP-binding protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44409.42 Da        Isoelectric Point: 9.5091

>NTDB_id=186497 BA022_RS11150 WP_088887536.1 2377026..2378243(+) (pilC) [Diaphorobacter nitroreducens strain SL-205]
MATVASRGIKDFVFEWEGKDRSGKIVRGEVRAAGENQVKATLRRQGVLPTKIKKRRMSAGKKIKPKDIALFTRQMATMMK
AGVPLLQAFDIVGRGNTNPSVTKLLNDIRGDVETGTSLNAAFRKYPMYFDSLYCNLVEAGEAAGILEALLDRLALYMEKT
EAIKSKIRSALMYPISVIIVAFVVVTIIMIFVIPAFKEVFTSFGADLPAPTLFVMAISEFFVAYWWLIFGVIGGGFYFFM
QAWKRSEKMQRFMDRFLLKMPIFGALIDKSCVARWTRTLSTMFAAGVPLVEALDSVGGASGNSVYAIATEKIQQEVSTGT
SLTAAMGNANVFPSMVLQMCAIGEESGSIDHMLGKAADFYEAEVDEMVAGLSSLMEPIIIVFLGTLIGGIVVSMYLPIFK
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=186497 BA022_RS11150 WP_088887536.1 2377026..2378243(+) (pilC) [Diaphorobacter nitroreducens strain SL-205]
ATGGCGACCGTTGCATCGAGGGGCATCAAGGACTTTGTCTTCGAGTGGGAGGGCAAGGATCGTAGCGGCAAGATCGTGCG
CGGCGAAGTACGCGCTGCGGGAGAGAACCAGGTCAAGGCGACGCTGCGGCGGCAGGGCGTTCTGCCAACCAAGATCAAGA
AGCGCCGGATGAGCGCGGGCAAAAAGATCAAGCCCAAAGACATCGCGCTGTTCACGCGCCAGATGGCCACGATGATGAAG
GCCGGCGTTCCACTGCTTCAGGCATTTGATATCGTGGGCCGGGGTAATACCAATCCCAGTGTGACCAAGCTGCTCAACGA
TATCCGCGGCGATGTGGAGACAGGAACGTCCCTGAATGCCGCGTTCCGTAAATATCCGATGTACTTCGACAGCCTTTACT
GCAACCTCGTAGAGGCCGGCGAAGCCGCCGGTATTCTGGAAGCGTTGCTCGACCGGCTGGCCCTGTACATGGAGAAGACC
GAGGCCATCAAATCCAAGATCCGGTCGGCGCTGATGTATCCGATCTCGGTGATCATCGTTGCGTTTGTCGTGGTGACGAT
CATCATGATTTTCGTGATTCCCGCGTTCAAAGAGGTTTTCACCTCGTTCGGAGCCGACCTGCCCGCCCCTACCCTGTTCG
TGATGGCCATCAGCGAATTCTTCGTGGCTTACTGGTGGCTGATATTCGGCGTCATCGGCGGGGGGTTCTACTTCTTCATG
CAGGCCTGGAAGCGCAGCGAAAAAATGCAGCGTTTCATGGACCGTTTCCTGCTGAAAATGCCCATCTTCGGTGCATTGAT
CGACAAGTCCTGTGTTGCCCGTTGGACCCGCACCCTGTCGACCATGTTCGCTGCCGGTGTGCCATTGGTGGAGGCACTGG
ACTCGGTGGGCGGTGCATCGGGCAACTCGGTCTACGCCATCGCGACGGAGAAGATTCAGCAGGAAGTCTCCACAGGTACC
AGCCTGACGGCCGCCATGGGGAATGCCAACGTGTTCCCTTCCATGGTGCTGCAGATGTGCGCGATCGGCGAGGAATCCGG
CTCCATCGACCACATGCTGGGCAAGGCCGCCGACTTCTATGAAGCCGAGGTGGATGAAATGGTGGCCGGCCTGTCCAGCC
TGATGGAGCCCATCATCATCGTGTTCCTGGGTACGCTGATCGGTGGCATCGTAGTGTCGATGTACCTTCCGATCTTCAAG
CTCGGGCAAGTGGTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.062

100

0.551
  pilG Neisseria gonorrhoeae MS11

53.283

97.778

0.521
  pilG Neisseria meningitidis 44/76-A

53.03

97.778

0.519
  pilC Acinetobacter baylyi ADP1

50.503

98.272

0.496
  pilC Acinetobacter baumannii D1279779

49.622

98.025

0.486
  pilC Legionella pneumophila strain ERS1305867

49.497

98.272

0.486
  pilC Vibrio campbellii strain DS40M4

39.9

99.012

0.395
  pilC Vibrio cholerae strain A1552

40.152

97.778

0.393
  pilC Thermus thermophilus HB27

37.845

98.519

0.373

Multiple sequence alignment