Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   A9C19_RS00930 Genome accession   NZ_CP016020
Coordinates   195071..195424 (+) Length   117 a.a.
NCBI ID   WP_072578214.1    Uniprot ID   A0A1L3MM44
Organism   Bacillus weihaiensis strain Alg07     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 190071..200424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9C19_RS00890 (A9C19_00860) fabZ 190712..191152 (+) 441 WP_072578206.1 3-hydroxyacyl-ACP dehydratase FabZ -
  A9C19_RS00895 (A9C19_00865) - 191344..191658 (+) 315 WP_072578207.1 hypothetical protein -
  A9C19_RS00900 (A9C19_00870) - 191872..192132 (+) 261 WP_072578208.1 spore coat associated protein CotJA -
  A9C19_RS00905 (A9C19_00875) - 192129..192395 (+) 267 WP_072578209.1 spore coat protein CotJB -
  A9C19_RS00910 (A9C19_00880) cotJC 192451..193020 (+) 570 WP_072578210.1 spore coat protein CotJC -
  A9C19_RS00915 (A9C19_00885) - 193294..193734 (-) 441 WP_072578211.1 YwpF family protein -
  A9C19_RS00920 (A9C19_00890) - 193802..194212 (-) 411 WP_233499311.1 helix-turn-helix domain-containing protein -
  A9C19_RS00925 (A9C19_00895) - 194482..194898 (+) 417 WP_072578213.1 hypothetical protein -
  A9C19_RS00930 (A9C19_00900) ssbB 195071..195424 (+) 354 WP_072578214.1 single-stranded DNA-binding protein Machinery gene
  A9C19_RS00935 (A9C19_00905) - 195681..195887 (+) 207 WP_145925766.1 hypothetical protein -
  A9C19_RS21620 - 195884..196033 (+) 150 WP_158515036.1 hypothetical protein -
  A9C19_RS00940 (A9C19_00910) - 196326..197006 (+) 681 WP_072578216.1 transaldolase family protein -
  A9C19_RS00945 (A9C19_00915) - 197085..197756 (+) 672 WP_083584240.1 DUF4867 family protein -
  A9C19_RS00950 (A9C19_00920) - 197860..199638 (+) 1779 WP_072578217.1 solute:sodium symporter family transporter -

Sequence

Protein


Download         Length: 117 a.a.        Molecular weight: 13215.91 Da        Isoelectric Point: 8.4798

>NTDB_id=185288 A9C19_RS00930 WP_072578214.1 195071..195424(+) (ssbB) [Bacillus weihaiensis strain Alg07]
MINQIILVGRLTKDPEIRYTAEGAPVANITLAVSRNFKNSAGEIETDFVNCTVWRRTAENTANYCRKGSIVGVTGRVQTR
SYESAERNRVYVTEVVADSVRFMSSKPRELVEQEQEK

Nucleotide


Download         Length: 354 bp        

>NTDB_id=185288 A9C19_RS00930 WP_072578214.1 195071..195424(+) (ssbB) [Bacillus weihaiensis strain Alg07]
GTGATTAATCAAATAATTCTGGTAGGTAGACTCACCAAGGATCCTGAAATACGCTACACAGCAGAAGGTGCACCCGTTGC
AAATATTACTTTAGCTGTTAGTAGAAACTTTAAGAACTCCGCTGGAGAAATTGAAACAGACTTTGTCAATTGTACAGTGT
GGAGAAGAACCGCGGAGAACACTGCCAATTACTGTCGAAAAGGATCAATCGTAGGTGTAACGGGTCGAGTTCAGACAAGA
AGCTATGAAAGTGCTGAGAGAAATCGAGTGTATGTCACAGAGGTTGTTGCAGACTCGGTTCGGTTTATGAGTAGTAAGCC
CCGCGAATTAGTTGAACAAGAGCAAGAAAAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1L3MM44

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

70.642

93.162

0.658
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.377

90.598

0.547
  ssb Latilactobacillus sakei subsp. sakei 23K

53.043

98.291

0.521
  ssbB Streptococcus sobrinus strain NIDR 6715-7

42.593

92.308

0.393
  ssbB/cilA Streptococcus pneumoniae TIGR4

42.202

93.162

0.393
  ssbB/cilA Streptococcus mitis SK321

41.284

93.162

0.385
  ssbB/cilA Streptococcus pneumoniae Rx1

41.284

93.162

0.385
  ssbB/cilA Streptococcus pneumoniae D39

41.284

93.162

0.385
  ssbB/cilA Streptococcus pneumoniae R6

41.284

93.162

0.385
  ssbA Streptococcus mutans UA159

40.741

92.308

0.376
  ssbB/cilA Streptococcus mitis NCTC 12261

40.367

93.162

0.376

Multiple sequence alignment