Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   LLUC08_RS01920 Genome accession   NZ_CP015903
Coordinates   380845..381234 (+) Length   129 a.a.
NCBI ID   WP_081199217.1    Uniprot ID   A0AAC9R3K6
Organism   Lactococcus lactis subsp. lactis strain UC08     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 380844..399878 380845..381234 within 0


Gene organization within MGE regions


Location: 380844..399878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUC08_RS01920 (LLUC08_0368) ssbB 380845..381234 (+) 390 WP_081199217.1 single-stranded DNA-binding protein Machinery gene
  LLUC08_RS01925 (LLUC08_0369) groES 381354..381638 (+) 285 WP_003131589.1 co-chaperone GroES -
  LLUC08_RS01930 (LLUC08_0370) groL 381727..383355 (+) 1629 WP_003131585.1 chaperonin GroEL -
  LLUC08_RS01935 (LLUC08_0371) - 383401..384213 (-) 813 WP_003131583.1 MBL fold metallo-hydrolase -
  LLUC08_RS01940 (LLUC08_0372) - 384382..385824 (-) 1443 WP_012897229.1 cell wall metabolism sensor histidine kinase WalK -
  LLUC08_RS01945 (LLUC08_0373) yycF 385817..386518 (-) 702 WP_003131580.1 response regulator YycF -
  LLUC08_RS01950 (LLUC08_0374) tmk 386696..387331 (+) 636 WP_012897230.1 dTMP kinase -
  LLUC08_RS01955 (LLUC08_0375) - 387464..388324 (+) 861 WP_081199219.1 DNA polymerase III subunit delta' -
  LLUC08_RS01960 (LLUC08_0376) ricT 388376..389158 (+) 783 WP_023188991.1 stage 0 sporulation family protein -
  LLUC08_RS01965 (LLUC08_0377) yabA 389151..389477 (+) 327 WP_011675472.1 DNA replication initiation control protein YabA -
  LLUC08_RS01970 (LLUC08_0378) rsmI 389477..390352 (+) 876 WP_003131568.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  LLUC08_RS01975 (LLUC08_0379) - 390429..390620 (-) 192 WP_012897234.1 hypothetical protein -
  LLUC08_RS01980 (LLUC08_0380) - 391219..391404 (-) 186 WP_081199221.1 hypothetical protein -
  LLUC08_RS01985 (LLUC08_0381) - 391948..392280 (-) 333 WP_081199223.1 hypothetical protein -
  LLUC08_RS01990 (LLUC08_0382) - 392280..392591 (-) 312 WP_058225857.1 hypothetical protein -
  LLUC08_RS01995 (LLUC08_0383) - 392769..393341 (-) 573 WP_128192774.1 hypothetical protein -
  LLUC08_RS02000 (LLUC08_0384) - 393355..393669 (-) 315 WP_081199227.1 hypothetical protein -
  LLUC08_RS02005 (LLUC08_0385) - 393789..393938 (-) 150 WP_153951467.1 hypothetical protein -
  LLUC08_RS02010 (LLUC08_0386) - 393962..394702 (-) 741 WP_081199229.1 hypothetical protein -
  LLUC08_RS02015 (LLUC08_0387) - 394702..395439 (-) 738 WP_081199231.1 phage replisome organiser protein -
  LLUC08_RS02020 (LLUC08_0388) - 395452..395778 (-) 327 WP_023163763.1 HTH domain-containing protein -
  LLUC08_RS02025 (LLUC08_0389) - 395765..396028 (-) 264 WP_081199233.1 hypothetical protein -
  LLUC08_RS02030 (LLUC08_0390) - 396025..396213 (-) 189 WP_081200226.1 hypothetical protein -
  LLUC08_RS02035 (LLUC08_0391) - 396280..396522 (-) 243 WP_054247183.1 hypothetical protein -
  LLUC08_RS02040 (LLUC08_0392) - 396548..396817 (-) 270 WP_023163767.1 hypothetical protein -
  LLUC08_RS02045 (LLUC08_0393) - 396814..397332 (-) 519 WP_081199235.1 hypothetical protein -
  LLUC08_RS02050 (LLUC08_0394) - 397337..397531 (-) 195 WP_023163769.1 DUF1655 domain-containing protein -
  LLUC08_RS02055 (LLUC08_0395) - 397676..397900 (-) 225 WP_242417823.1 hypothetical protein -
  LLUC08_RS02060 (LLUC08_0396) - 397991..398614 (+) 624 WP_237025762.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 14700.79 Da        Isoelectric Point: 8.3705

>NTDB_id=183111 LLUC08_RS01920 WP_081199217.1 380845..381234(+) (ssbB) [Lactococcus lactis subsp. lactis strain UC08]
MNKTMLIGRLTSVPEISKTTNDKSYVRVTLAVNRRFKNEKGEREADFISIIIWGKSAETLVSYAKKGSLISIEGEIRTRN
YTDKQNQKHYVTEILGLSYDLLESRATIALRESAIKTEETLLDAEELPF

Nucleotide


Download         Length: 390 bp        

>NTDB_id=183111 LLUC08_RS01920 WP_081199217.1 380845..381234(+) (ssbB) [Lactococcus lactis subsp. lactis strain UC08]
ATGAATAAAACCATGTTAATTGGACGCTTAACCAGTGTGCCAGAAATTTCAAAAACAACAAATGATAAATCATATGTCCG
TGTGACCTTAGCAGTCAATCGCCGTTTCAAAAATGAAAAAGGAGAACGAGAGGCAGATTTTATTTCAATTATTATTTGGG
GAAAATCTGCAGAAACTTTAGTTTCTTACGCAAAAAAAGGAAGTCTTATTTCAATTGAAGGAGAAATTAGAACTAGAAAT
TATACGGATAAGCAAAATCAAAAACATTATGTCACAGAAATCTTAGGACTGAGTTATGATTTACTTGAAAGTAGGGCAAC
AATCGCTTTACGAGAAAGCGCTATAAAGACTGAAGAAACCTTACTTGATGCGGAAGAACTCCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Lactococcus lactis subsp. cremoris KW2

89.922

100

0.899
  ssbB Streptococcus sobrinus strain NIDR 6715-7

60

100

0.605
  ssbB/cilA Streptococcus pneumoniae TIGR4

56.923

100

0.574
  ssbB/cilA Streptococcus pneumoniae Rx1

56.154

100

0.566
  ssbB/cilA Streptococcus pneumoniae D39

56.154

100

0.566
  ssbB/cilA Streptococcus pneumoniae R6

56.154

100

0.566
  ssbB/cilA Streptococcus mitis NCTC 12261

56.154

100

0.566
  ssbB/cilA Streptococcus mitis SK321

56.154

100

0.566
  ssbA Streptococcus mutans UA159

55.385

100

0.558
  ssb Latilactobacillus sakei subsp. sakei 23K

43.75

86.822

0.38
  ssbA Bacillus subtilis subsp. subtilis str. 168

44.762

81.395

0.364

Multiple sequence alignment