Detailed information NTG0182900

Bioinformatically predicted

Overview

• Name: comGC
• Type: Machinery gene
• Locus tag: LL275_RS11730
• Genome accession: NZ_CP015897
• Coordinates: 2311023..2311406 (-)
• Length: 127 a.a.
• NCBI ID: WP_081040865.1
• Uniprot ID: -
• Organism: Lactococcus lactis subsp. lactis strain 275
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2306023..2316406

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LL275_RS11690 (LL275_2263)	-	2306550..2307359 (-)	810	WP_014570791.1	metal ABC transporter permease	-
LL275_RS11695 (LL275_2264)	-	2307352..2308089 (-)	738	WP_003129989.1	metal ABC transporter ATP-binding protein	-
LL275_RS11700 (LL275_2265)	-	2308266..2309108 (-)	843	WP_003129990.1	metal ABC transporter substrate-binding protein	-
LL275_RS11705 (LL275_2266)	-	2309105..2309542 (-)	438	WP_003129992.1	zinc-dependent MarR family transcriptional regulator	-
LL275_RS11710 (LL275_2267)	comGG	2309632..2309916 (-)	285	WP_003129993.1	competence type IV pilus minor pilin ComGG	Machinery gene
LL275_RS11715 (LL275_2268)	comGF	2309955..2310401 (-)	447	WP_029344525.1	competence type IV pilus minor pilin ComGF	Machinery gene
LL275_RS11720 (LL275_2269)	comGE	2310364..2310660 (-)	297	WP_010906316.1	competence type IV pilus minor pilin ComGE	Machinery gene
LL275_RS11725 (LL275_2270)	comGD	2310632..2311063 (-)	432	WP_080585155.1	competence type IV pilus minor pilin ComGD	Machinery gene
LL275_RS11730 (LL275_2271)	comGC	2311023..2311406 (-)	384	WP_081040865.1	competence type IV pilus major pilin ComGC	Machinery gene
LL275_RS11735 (LL275_2272)	comGB	2311420..2312493 (-)	1074	WP_014570824.1	competence type IV pilus assembly protein ComGB	Machinery gene
LL275_RS11740 (LL275_2273)	comGA	2312387..2313326 (-)	940	Protein_2268	competence type IV pilus ATPase ComGA	-

Sequence

Protein

• Length: 127 a.a.
• Molecular weight: 14807.43 Da
• Isoelectric Point: 8.4538

>NTDB_id=182900 LL275_RS11730 WP_081040865.1 2311023..2311406(-) (comGC) [Lactococcus lactis subsp. lactis strain 275]
MERTKKFILKKIQKIFLFVKICEKKCRQKELKAFTLIEMLIVLAIISILILLFVPNLIKEKSQVQKTGEAAVVKVVESQA
QLYELDHDDEKPSLPELLSAGMITQKQISAYDNYYDQNKNEERNFND

Nucleotide

• Length: 384 bp

>NTDB_id=182900 LL275_RS11730 WP_081040865.1 2311023..2311406(-) (comGC) [Lactococcus lactis subsp. lactis strain 275]
ATGGAAAGAACAAAGAAGTTTATTTTAAAAAAAATACAAAAAATATTTTTATTCGTTAAAATTTGTGAAAAAAAATGCCG
TCAGAAAGAGCTAAAAGCTTTTACTTTGATAGAGATGTTAATTGTACTAGCTATTATTAGTATTTTAATATTACTATTTG
TTCCAAATTTAATTAAAGAAAAATCACAAGTTCAAAAAACTGGAGAAGCGGCAGTTGTAAAAGTAGTAGAAAGTCAAGCT
CAACTTTATGAATTAGATCATGATGATGAGAAGCCGAGTCTGCCAGAATTGCTCAGCGCTGGGATGATTACTCAAAAACA
AATTTCTGCTTACGATAATTACTATGATCAGAACAAAAATGAAGAACGAAATTTTAATGACTAG

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (32-52)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGC	Lactococcus lactis subsp. cremoris KW2	80.172	91.339	0.732
comGC/cglC	Streptococcus mitis SK321	55.446	79.528	0.441
comYC	Streptococcus gordonii str. Challis substr. CH1	55.556	77.953	0.433
comGC/cglC	Streptococcus pneumoniae R6	54.455	79.528	0.433
comGC/cglC	Streptococcus pneumoniae TIGR4	54.455	79.528	0.433
comGC/cglC	Streptococcus pneumoniae Rx1	54.455	79.528	0.433
comGC/cglC	Streptococcus pneumoniae D39	54.455	79.528	0.433
comYC	Streptococcus mutans UA140	54.455	79.528	0.433
comYC	Streptococcus mutans UA159	54.455	79.528	0.433
comGC/cglC	Streptococcus mitis NCTC 12261	57.303	70.079	0.402
comYC	Streptococcus suis isolate S10	56.818	69.291	0.394