Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   LL158_RS05455 Genome accession   NZ_CP015894
Coordinates   1070316..1070966 (-) Length   216 a.a.
NCBI ID   WP_015082373.1    Uniprot ID   A0AAJ6MHE1
Organism   Lactococcus cremoris strain 158     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1065316..1075966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LL158_RS05425 (LL158_1037) - 1065507..1067039 (+) 1533 WP_015082368.1 Nramp family divalent metal transporter -
  LL158_RS05430 (LL158_1038) - 1067113..1068081 (+) 969 WP_080600833.1 PhoH family protein -
  LL158_RS05435 (LL158_1039) - 1068151..1068645 (+) 495 WP_015082370.1 NUDIX hydrolase -
  LL158_RS05440 (LL158_1040) ybeY 1068736..1069224 (+) 489 WP_011835335.1 rRNA maturation RNase YbeY -
  LL158_RS05445 (LL158_1041) - 1069208..1069663 (+) 456 WP_015082371.1 diacylglycerol kinase family protein -
  LL158_RS05450 (LL158_1042) - 1069680..1070258 (+) 579 WP_015082372.1 nucleotidyltransferase family protein -
  LL158_RS05455 (LL158_1043) comFC 1070316..1070966 (-) 651 WP_015082373.1 ComF family protein Machinery gene
  LL158_RS12775 - 1070966..1072260 (-) 1295 Protein_1049 helicase-related protein -
  LL158_RS05470 (LL158_1045) - 1072317..1072952 (+) 636 WP_015082374.1 YigZ family protein -
  LL158_RS05475 (LL158_1046) - 1072994..1073494 (+) 501 WP_015082375.1 VanZ family protein -
  LL158_RS05480 (LL158_1047) - 1073581..1074579 (+) 999 WP_237025417.1 DUF475 domain-containing protein -
  LL158_RS05485 (LL158_1048) - 1074688..1075455 (+) 768 WP_011676099.1 5'-nucleotidase -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25304.70 Da        Isoelectric Point: 9.9870

>NTDB_id=182825 LL158_RS05455 WP_015082373.1 1070316..1070966(-) (comFC) [Lactococcus cremoris strain 158]
MQTCLLCSRIIKQTLTFSEFFLLKNKRNLICNKCQSLFKKIPNERCPRCSKSNSKGICADCLKWEEKGIIVNHQSIFIYN
QAMKDYFSLYKFMGDYRLHEVFDSYFKNLSKKIPLVPIPVSPKRLQERGFNQVTAFLKDRAYLYLLEKEDIVRQSSLNRE
GRLSTSNPFKLKEGEKIPQKIILIDDIYTTGTTFYHAIKTLKKANPIEITTFSLCR

Nucleotide


Download         Length: 651 bp        

>NTDB_id=182825 LL158_RS05455 WP_015082373.1 1070316..1070966(-) (comFC) [Lactococcus cremoris strain 158]
ATGCAAACTTGTCTGCTTTGTTCCAGAATTATCAAACAAACACTCACTTTTAGTGAATTCTTTTTACTAAAGAATAAGAG
AAATTTAATATGCAATAAATGCCAATCACTGTTTAAAAAAATTCCTAACGAACGTTGTCCTCGTTGCTCTAAATCTAACT
CTAAAGGTATATGTGCTGACTGTCTCAAGTGGGAAGAAAAAGGAATCATTGTTAATCATCAGTCAATTTTTATTTATAAC
CAAGCAATGAAGGATTACTTTAGTCTTTACAAATTTATGGGAGATTATCGATTACACGAAGTCTTCGATTCCTATTTTAA
AAATTTGTCCAAAAAAATTCCTCTGGTTCCCATTCCGGTTTCTCCTAAAAGATTACAAGAAAGAGGTTTTAACCAAGTAA
CAGCTTTTCTAAAAGATAGAGCTTATCTTTATTTGCTTGAAAAAGAGGATATTGTCAGACAATCAAGTCTTAATCGCGAG
GGACGTCTATCAACTAGCAATCCTTTTAAGTTGAAAGAGGGTGAAAAAATACCCCAAAAAATCATTTTGATTGATGATAT
TTATACAACTGGAACTACTTTTTATCATGCAATAAAAACCTTAAAGAAAGCTAATCCGATTGAAATTACAACTTTCTCAC
TCTGCCGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Lactococcus lactis subsp. cremoris KW2

97.015

62.037

0.602
  comFC/cflB Streptococcus mitis NCTC 12261

49.083

100

0.495
  comFC/cflB Streptococcus mitis SK321

47.248

100

0.477
  comFC/cflB Streptococcus pneumoniae Rx1

46.789

100

0.472
  comFC/cflB Streptococcus pneumoniae D39

46.789

100

0.472
  comFC/cflB Streptococcus pneumoniae R6

46.789

100

0.472
  comFC/cflB Streptococcus pneumoniae TIGR4

46.789

100

0.472
  comFC Bacillus subtilis subsp. subtilis str. 168

34.802

100

0.366

Multiple sequence alignment