Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A6B47_RS00925 Genome accession   NZ_CP015883
Coordinates   220307..220759 (-) Length   150 a.a.
NCBI ID   WP_087548487.1    Uniprot ID   -
Organism   Enterococcus faecalis strain sorialis     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 187898..229663 220307..220759 within 0
IS/Tn 219499..219954 220307..220759 flank 353


Gene organization within MGE regions


Location: 187898..229663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6B47_RS00800 (A6B47_00765) - 187943..188797 (+) 855 WP_080476216.1 PEP phosphonomutase -
  A6B47_RS00805 (A6B47_00770) - 188812..189126 (+) 315 WP_065535865.1 PTS sugar transporter subunit IIB -
  A6B47_RS00810 (A6B47_00775) - 189139..189456 (+) 318 WP_065535864.1 PTS lactose/cellobiose transporter subunit IIA -
  A6B47_RS00815 (A6B47_00780) - 189503..190819 (+) 1317 WP_065535863.1 PTS sugar transporter subunit IIC -
  A6B47_RS00820 (A6B47_00785) - 190961..193504 (+) 2544 WP_168354174.1 family 16 glycosylhydrolase -
  A6B47_RS00825 (A6B47_00790) - 193595..200905 (+) 7311 WP_087548477.1 GDSL-type esterase/lipase family protein -
  A6B47_RS00830 (A6B47_00795) tnpA 201221..201676 (-) 456 WP_087548478.1 IS200/IS605 family transposase -
  A6B47_RS15560 - 201850..202725 (-) 876 Protein_158 transposase -
  A6B47_RS00840 (A6B47_00800) - 202769..202933 (-) 165 WP_231399931.1 hypothetical protein -
  A6B47_RS15565 - 204760..205109 (-) 350 Protein_160 hypothetical protein -
  A6B47_RS15570 (A6B47_00810) - 205766..206749 (-) 984 WP_087548480.1 site-2 protease family protein -
  A6B47_RS00860 (A6B47_00815) - 206750..207988 (-) 1239 WP_087548481.1 S8 family serine peptidase -
  A6B47_RS00865 (A6B47_00820) - 207985..210129 (-) 2145 WP_087548482.1 peptidase domain-containing ABC transporter -
  A6B47_RS00870 (A6B47_00825) - 210141..213122 (-) 2982 WP_087548483.1 type 2 lanthipeptide synthetase LanM family protein -
  A6B47_RS00875 (A6B47_00830) cylL-S 213183..213374 (-) 192 WP_002358181.1 lanthipeptide cytolysin subunit CylL-S -
  A6B47_RS00880 (A6B47_00835) cylL-L 213408..213614 (-) 207 WP_002358179.1 lanthipeptide cytolysin subunit CylL-L -
  A6B47_RS00890 (A6B47_00845) cylR2 214018..214218 (+) 201 WP_002358483.1 cytolysin regulator CylR2 -
  A6B47_RS00895 (A6B47_00850) - 214686..215998 (-) 1313 Protein_168 hypothetical protein -
  A6B47_RS15755 - 215988..216119 (-) 132 WP_002368288.1 hypothetical protein -
  A6B47_RS00900 (A6B47_00855) - 216682..217815 (-) 1134 WP_231399933.1 DNA cytosine methyltransferase -
  A6B47_RS15575 - 217818..218024 (-) 207 WP_231399935.1 hypothetical protein -
  A6B47_RS00905 (A6B47_00860) - 218323..218559 (-) 237 WP_087548484.1 hypothetical protein -
  A6B47_RS00910 (A6B47_00865) - 218754..219307 (-) 554 Protein_173 thermonuclease family protein -
  A6B47_RS00915 (A6B47_00870) tnpA 219499..219954 (+) 456 WP_087548485.1 IS200/IS605 family transposase -
  A6B47_RS00920 (A6B47_00875) - 220141..220293 (-) 153 WP_087548486.1 hypothetical protein -
  A6B47_RS00925 (A6B47_00880) ssb 220307..220759 (-) 453 WP_087548487.1 single-stranded DNA-binding protein Machinery gene
  A6B47_RS00930 (A6B47_00885) - 220825..221049 (-) 225 Protein_177 PcfR -
  A6B47_RS00935 (A6B47_00890) - 221247..221501 (+) 255 WP_087548488.1 hypothetical protein -
  A6B47_RS00940 (A6B47_00895) - 221642..221818 (-) 177 WP_087548489.1 putative holin-like toxin -
  A6B47_RS00945 (A6B47_00900) - 221966..222151 (+) 186 WP_231399954.1 hypothetical protein -
  A6B47_RS15760 - 222244..222369 (-) 126 WP_255321397.1 hypothetical protein -
  A6B47_RS00950 (A6B47_00905) - 222502..223113 (-) 612 WP_231399956.1 hypothetical protein -
  A6B47_RS00955 (A6B47_00910) mobP2 223189..225249 (-) 2061 WP_087548490.1 MobP2 family relaxase -
  A6B47_RS00960 (A6B47_00915) - 225242..225634 (-) 393 WP_002360836.1 hypothetical protein -
  A6B47_RS00965 (A6B47_00920) - 225627..225908 (-) 282 WP_087548491.1 hypothetical protein -
  A6B47_RS00970 (A6B47_00925) - 226280..227221 (-) 942 WP_087548492.1 hypothetical protein -
  A6B47_RS00975 (A6B47_00930) - 227228..227866 (-) 639 WP_002360830.1 hypothetical protein -
  A6B47_RS00980 (A6B47_00935) - 227957..228283 (-) 327 WP_002360827.1 type II toxin-antitoxin system PemK/MazF family toxin -
  A6B47_RS00985 (A6B47_00940) - 228284..228517 (-) 234 WP_087548493.1 antitoxin MazE -
  A6B47_RS00990 (A6B47_00945) - 228581..229663 (-) 1083 WP_231399959.1 lysozyme family protein -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 16815.78 Da        Isoelectric Point: 4.9228

>NTDB_id=182735 A6B47_RS00925 WP_087548487.1 220307..220759(-) (ssb) [Enterococcus faecalis strain sorialis]
MINNVTLVGRLTKDCDLRYTSSGVAVAAFTLAVNRNFTNQNGEREADYIQCVIWRKPAEALANYTRKGTLIGLVGRLQTR
NYENQQGQRIYVTEMVVESFQLLESKEVSQQRGVNASNPTPVGQQESNTQQPFPDLEGSSIEISDRDLPF

Nucleotide


Download         Length: 453 bp        

>NTDB_id=182735 A6B47_RS00925 WP_087548487.1 220307..220759(-) (ssb) [Enterococcus faecalis strain sorialis]
ATGATTAATAATGTGACTTTAGTAGGAAGACTTACAAAAGACTGTGATTTGCGTTATACGTCAAGTGGTGTAGCTGTTGC
AGCTTTTACACTAGCAGTTAACCGAAATTTTACAAATCAAAATGGTGAACGTGAAGCAGACTATATTCAGTGTGTGATTT
GGCGTAAACCTGCAGAAGCTTTAGCAAACTATACACGAAAAGGAACATTGATTGGTCTTGTGGGTAGACTTCAAACACGT
AACTATGAGAATCAACAAGGACAACGTATTTATGTGACAGAAATGGTTGTAGAAAGCTTCCAATTGTTAGAGTCAAAAGA
AGTTAGTCAACAACGTGGTGTTAACGCTTCTAATCCTACACCAGTTGGACAGCAGGAAAGCAATACGCAACAACCCTTTC
CAGATTTAGAAGGTAGTTCTATTGAGATTTCAGATCGTGACTTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

54.386

100

0.62
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.445

100

0.593
  ssbB/cilA Streptococcus pneumoniae TIGR4

42.667

100

0.427
  ssbB/cilA Streptococcus mitis NCTC 12261

42.667

100

0.427
  ssbB/cilA Streptococcus pneumoniae Rx1

42

100

0.42
  ssbB/cilA Streptococcus pneumoniae D39

42

100

0.42
  ssbB/cilA Streptococcus pneumoniae R6

42

100

0.42
  ssbB/cilA Streptococcus mitis SK321

42

100

0.42
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

70.667

0.407
  ssbA Streptococcus mutans UA159

38.667

100

0.387
  ssbB Streptococcus sobrinus strain NIDR 6715-7

47.458

78.667

0.373

Multiple sequence alignment