Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AsACE_RS13275 Genome accession   NZ_CP015615
Coordinates   2738286..2739515 (+) Length   409 a.a.
NCBI ID   WP_004810078.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain ACE     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2733286..2744515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AsACE_RS13230 (AsACE_CH02634) rimP 2733542..2734066 (-) 525 WP_076754530.1 ribosome maturation factor RimP -
  AsACE_RS13260 (AsACE_CH02640) secG 2735128..2735457 (-) 330 WP_004896327.1 preprotein translocase subunit SecG -
  AsACE_RS13265 (AsACE_CH02641) tpiA 2735471..2736262 (-) 792 WP_076754533.1 triose-phosphate isomerase -
  AsACE_RS13270 (AsACE_CH02642) pilB 2736545..2738254 (+) 1710 WP_076754535.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AsACE_RS13275 (AsACE_CH02643) pilC 2738286..2739515 (+) 1230 WP_004810078.1 type II secretion system F family protein Machinery gene
  AsACE_RS16670 (AsACE_CH02644) pilD 2739515..2740375 (+) 861 WP_076754537.1 prepilin peptidase Machinery gene
  AsACE_RS13285 (AsACE_CH02645) coaE 2740377..2740973 (+) 597 WP_076754540.1 dephospho-CoA kinase -
  AsACE_RS13290 (AsACE_CH02646) - 2740994..2741917 (-) 924 WP_034424053.1 DMT family transporter -
  AsACE_RS13295 (AsACE_CH02647) rlmB 2741924..2742673 (-) 750 WP_008306825.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  AsACE_RS13300 (AsACE_CH02648) - 2742826..2743149 (-) 324 WP_004810087.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44984.45 Da        Isoelectric Point: 9.9331

>NTDB_id=181540 AsACE_RS13275 WP_004810078.1 2738286..2739515(+) (pilC) [Acinetobacter schindleri strain ACE]
MASVKKGQMMPTFTYEGVDRKGIKIKGEIPARNLALAKVTLRKQGISIKSIREKKKNILEGLMKKKVTTLDITIFTRQLA
TMMKAGVPLVQGFEIVAEGLENPSMREVVLGIKGEVEGGNTFAGALRKYPQYFDKLFCSLVESGEQSGALETMLDRVAIY
KEKSELLKQKIKKAMKYPATVVVVAIIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVNMSEWMQKYWFLLIIGIGVVI
TAFLEAKKRSKKFRDFLDKAALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEDAVMKIREDV
ATGQQLQFAMRVTNKFPSMAVQMVSIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAVLGVLVGGLVIAMYL
PIFQMGSVV

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=181540 AsACE_RS13275 WP_004810078.1 2738286..2739515(+) (pilC) [Acinetobacter schindleri strain ACE]
ATGGCTTCAGTGAAAAAAGGTCAAATGATGCCGACCTTCACCTATGAAGGGGTAGACCGTAAAGGTATAAAGATTAAAGG
GGAAATACCTGCACGTAACCTCGCCTTGGCCAAGGTCACGTTGCGTAAGCAGGGTATCAGTATCAAGAGTATTCGAGAAA
AAAAGAAGAATATTCTTGAAGGCCTGATGAAGAAAAAAGTGACCACACTGGATATCACCATTTTTACCCGTCAGCTTGCT
ACCATGATGAAAGCCGGTGTACCACTCGTACAAGGCTTTGAAATTGTAGCGGAAGGCCTTGAAAATCCTTCAATGCGCGA
GGTTGTACTCGGGATTAAAGGTGAGGTTGAGGGCGGAAATACCTTTGCAGGTGCACTGCGCAAGTATCCTCAATATTTTG
ATAAGCTATTCTGTTCGTTGGTTGAATCCGGTGAACAATCCGGTGCTTTAGAGACCATGCTGGATCGTGTTGCGATTTAT
AAAGAAAAAAGTGAACTGTTAAAGCAGAAAATTAAAAAAGCGATGAAATACCCAGCAACAGTGGTTGTTGTTGCAATTAT
TGTTACGATTATTTTGATGGTTAAAGTCGTTCCAGTTTTCCAGGATCTCTTCTCGTCATTTGGTGCAGACTTGCCAGCAT
TTACAAAAATGGTAGTCAATATGTCTGAATGGATGCAGAAATACTGGTTCCTGCTGATCATTGGGATTGGTGTAGTCATT
ACTGCTTTCCTGGAAGCAAAAAAACGCAGTAAAAAATTCCGTGATTTCTTGGATAAGGCTGCACTAAAAGCGCCTATCTT
TGGTGATCTGGTTTATAAAGCGATTATTGCTCGTTATAGTCGTACTCTGGCAACGACTTTTGCTGCTGGTGTTCCATTAA
TTGATGCACTGGAATCAACTGCAGGCGCTACAAATAATGTAGTTTATGAAGATGCGGTAATGAAAATTCGTGAGGATGTT
GCTACTGGCCAACAACTGCAATTCGCCATGCGTGTTACCAATAAGTTTCCTTCTATGGCCGTGCAAATGGTCTCGATTGG
TGAAGAATCTGGTGCACTAGATGCCATGCTGGATAAAGTTGCGACCCATTATGAAAATGAAGTCGACAATGCCGTTGATG
GTTTGACCTCCATGATGGAGCCATTGATTATGGCCGTTCTTGGTGTGCTTGTAGGTGGTCTTGTTATTGCAATGTACCTG
CCAATTTTCCAGATGGGTTCCGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)

Type II secretion system (T2SS), protein F (T2SSF)

(280-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

89.435

99.511

0.89
  pilC Acinetobacter baylyi ADP1

82.555

99.511

0.822
  pilC Pseudomonas stutzeri DSM 10701

62.217

97.066

0.604
  pilC Legionella pneumophila strain ERS1305867

54.02

97.311

0.526
  pilG Neisseria gonorrhoeae MS11

46.985

97.311

0.457
  pilG Neisseria meningitidis 44/76-A

46.985

97.311

0.457
  pilC Vibrio cholerae strain A1552

42.647

99.756

0.425
  pilC Vibrio campbellii strain DS40M4

41.235

99.022

0.408

Multiple sequence alignment