Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   A7E59_RS08880 Genome accession   NZ_CP015552
Coordinates   1817634..1818080 (-) Length   148 a.a.
NCBI ID   WP_046100579.1    Uniprot ID   A0AAJ0JNB3
Organism   Staphylococcus carnosus strain TMW 2.1538     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1812634..1823080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7E59_RS08840 (A7E59_08675) - 1813323..1813772 (-) 450 WP_052719496.1 DUF3310 domain-containing protein -
  A7E59_RS08845 (A7E59_08680) - 1813773..1814303 (-) 531 WP_015899740.1 hypothetical protein -
  A7E59_RS08850 - 1814309..1814485 (-) 177 WP_156768906.1 hypothetical protein -
  A7E59_RS08855 (A7E59_08685) - 1814482..1814889 (-) 408 WP_046100673.1 RusA family crossover junction endodeoxyribonuclease -
  A7E59_RS08860 (A7E59_08695) - 1815055..1815840 (-) 786 WP_046100671.1 ATP-binding protein -
  A7E59_RS08865 (A7E59_08700) - 1815841..1816611 (-) 771 WP_046100582.1 conserved phage C-terminal domain-containing protein -
  A7E59_RS08870 (A7E59_08705) - 1816604..1816951 (-) 348 WP_200894321.1 hypothetical protein -
  A7E59_RS08875 (A7E59_08710) - 1816944..1817621 (-) 678 WP_046100580.1 putative HNHc nuclease -
  A7E59_RS08880 (A7E59_08715) ssbA 1817634..1818080 (-) 447 WP_046100579.1 single-stranded DNA-binding protein Machinery gene
  A7E59_RS08885 (A7E59_08720) - 1818077..1818715 (-) 639 WP_046100578.1 ERF family protein -
  A7E59_RS08890 (A7E59_08725) - 1818672..1818932 (-) 261 WP_015899731.1 DUF2483 family protein -
  A7E59_RS08895 (A7E59_08730) - 1818925..1819170 (-) 246 WP_046100577.1 hypothetical protein -
  A7E59_RS08900 (A7E59_08735) - 1819228..1819410 (-) 183 WP_046100576.1 hypothetical protein -
  A7E59_RS08905 (A7E59_08740) - 1819407..1819637 (-) 231 WP_046100575.1 DUF771 domain-containing protein -
  A7E59_RS08910 (A7E59_08745) - 1819697..1819903 (+) 207 WP_046100574.1 hypothetical protein -
  A7E59_RS08915 (A7E59_08755) - 1820310..1820510 (-) 201 WP_046100573.1 hypothetical protein -
  A7E59_RS08920 (A7E59_08760) - 1820522..1820731 (-) 210 WP_046100572.1 hypothetical protein -
  A7E59_RS08925 (A7E59_08765) - 1820765..1821205 (-) 441 WP_052719490.1 ORF6C domain-containing protein -
  A7E59_RS08930 (A7E59_08770) - 1821314..1822255 (-) 942 WP_046100570.1 DUF3102 domain-containing protein -
  A7E59_RS08935 (A7E59_08775) - 1822269..1822523 (-) 255 WP_046100569.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16713.43 Da        Isoelectric Point: 4.9115

>NTDB_id=180611 A7E59_RS08880 WP_046100579.1 1817634..1818080(-) (ssbA) [Staphylococcus carnosus strain TMW 2.1538]
MINRVVLVGRLTKDPEFRTTPSGIDVATFTLAVNRNFKSKNGEQQADFINCVVFRKQAENVNNYLNKGSLAGVDGLLQSR
SYENKEGQRVFVTEVVCDSVQFLEPKNTQSSNNNQSNNQVQQREKALQSDNPFNNSNNFDMDTDDLPF

Nucleotide


Download         Length: 447 bp        

>NTDB_id=180611 A7E59_RS08880 WP_046100579.1 1817634..1818080(-) (ssbA) [Staphylococcus carnosus strain TMW 2.1538]
ATGATTAACAGAGTCGTATTAGTAGGTCGCTTAACAAAAGACCCAGAATTCAGAACAACGCCAAGCGGTATAGACGTAGC
AACATTCACACTAGCAGTCAACCGTAATTTTAAAAGTAAAAATGGAGAGCAACAGGCGGACTTTATCAACTGCGTCGTAT
TCCGTAAACAAGCAGAAAACGTCAATAACTATTTGAATAAAGGAAGTTTAGCAGGTGTCGATGGTCTCTTACAATCACGA
AGCTATGAGAATAAGGAAGGACAAAGAGTATTTGTTACGGAAGTCGTATGTGACAGTGTGCAATTCCTAGAACCTAAGAA
TACACAATCCTCAAATAATAACCAATCAAATAACCAAGTGCAGCAAAGAGAGAAGGCGCTTCAAAGCGACAATCCATTCA
ATAATAGTAACAACTTTGATATGGATACGGATGATTTACCTTTTTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.977

100

0.662
  ssb Latilactobacillus sakei subsp. sakei 23K

51.176

100

0.588
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

71.622

0.419
  ssbB Streptococcus sobrinus strain NIDR 6715-7

39.865

100

0.399
  ssbA Streptococcus mutans UA159

39.865

100

0.399
  ssbB/cilA Streptococcus mitis NCTC 12261

37.162

100

0.372
  ssbB/cilA Streptococcus pneumoniae TIGR4

37.162

100

0.372
  ssbB/cilA Streptococcus pneumoniae Rx1

36.486

100

0.365
  ssbB/cilA Streptococcus pneumoniae D39

36.486

100

0.365
  ssbB/cilA Streptococcus pneumoniae R6

36.486

100

0.365
  ssbB/cilA Streptococcus mitis SK321

36.486

100

0.365

Multiple sequence alignment