Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FORC36_RS12705 Genome accession   NZ_CP015512
Coordinates   2651757..2652983 (+) Length   408 a.a.
NCBI ID   WP_085761331.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FORC_036     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2646757..2657983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC36_RS12685 (FORC36_2386) ampD 2647778..2648350 (-) 573 WP_013571143.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  FORC36_RS12690 (FORC36_2387) nadC 2648443..2649330 (+) 888 WP_013571142.1 carboxylating nicotinate-nucleotide diphosphorylase -
  FORC36_RS12695 (FORC36_2388) pilA 2649553..2650020 (+) 468 WP_045596840.1 pilin Machinery gene
  FORC36_RS12700 (FORC36_2389) pilB 2650020..2651708 (+) 1689 WP_045596841.1 type IV-A pilus assembly ATPase PilB Machinery gene
  FORC36_RS12705 (FORC36_2390) pilC 2651757..2652983 (+) 1227 WP_085761331.1 type II secretion system F family protein Machinery gene
  FORC36_RS12710 (FORC36_2391) pilD 2653077..2653946 (+) 870 WP_011079548.1 prepilin peptidase Machinery gene
  FORC36_RS12715 (FORC36_2392) coaE 2653948..2654556 (+) 609 WP_045596843.1 dephospho-CoA kinase -
  FORC36_RS12720 (FORC36_2393) zapD 2654589..2655329 (+) 741 WP_045596844.1 cell division protein ZapD -
  FORC36_RS12725 (FORC36_2394) yacG 2655392..2655586 (+) 195 WP_026060801.1 DNA gyrase inhibitor YacG -
  FORC36_RS12730 (FORC36_2395) rplS 2655788..2656141 (-) 354 WP_011079544.1 50S ribosomal protein L19 -
  FORC36_RS12735 (FORC36_2396) trmD 2656183..2656932 (-) 750 WP_011079543.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  FORC36_RS12740 (FORC36_2397) rimM 2656960..2657508 (-) 549 WP_011079542.1 ribosome maturation factor RimM -
  FORC36_RS12745 (FORC36_2398) rpsP 2657524..2657772 (-) 249 WP_011079541.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45263.52 Da        Isoelectric Point: 10.3355

>NTDB_id=180218 FORC36_RS12705 WP_085761331.1 2651757..2652983(+) (pilC) [Vibrio vulnificus strain FORC_036]
MKLKTHSQIKNYQWKGINGAGKKVSGNTLALTELEVRDKLKMQHIQIKKIKKSSVSVFTRLSHKVKGKDITLLTRQLATM
LTTGVPILQSLKLVADNHRKAEMKSILANVSKAVEAGTPLSKALRSASPQFDGIYVDLVATGEQSGNLDQVFERLAFYRE
KNEQLRAKVIKALIYPCMVVLVALGVSYLMLTQVIPEFRKMFTGFGAELPWFTQKVLDLSDFVQAYSSWFFITLFSAIYL
LRGLSRKSPAFRLKLSRLSLKIPVIGGVLSKAAIAKFSRTLATSFSAGIPILTSLKTTSKTAGNLHYQYAIEDVYRDTAA
GMPMYIAMRNSLAFPELVLQMVMIGEESGQMDDMLNKIATIYEFEVDNTVDNLGKILEPLIIVFLGVVVGGLVTAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=180218 FORC36_RS12705 WP_085761331.1 2651757..2652983(+) (pilC) [Vibrio vulnificus strain FORC_036]
ATGAAGCTTAAAACCCATTCACAAATCAAAAACTATCAATGGAAAGGGATTAACGGAGCTGGAAAAAAAGTCTCCGGCAA
CACGCTGGCGCTCACCGAGCTTGAAGTGCGTGATAAGCTGAAAATGCAGCATATCCAGATCAAAAAGATCAAGAAATCCA
GTGTGTCAGTCTTCACAAGGTTAAGCCATAAAGTCAAAGGCAAAGACATCACACTGCTTACCCGCCAACTCGCCACCATG
CTGACCACTGGTGTCCCTATTCTCCAATCACTTAAATTGGTTGCTGACAACCATCGCAAAGCCGAGATGAAGTCGATTTT
AGCCAATGTGAGCAAAGCCGTTGAAGCGGGTACGCCGTTATCCAAAGCGCTTCGCAGTGCCAGCCCACAATTCGATGGCA
TTTATGTTGACTTAGTCGCCACTGGTGAACAATCGGGTAATCTTGATCAAGTTTTTGAACGTCTCGCTTTTTATCGAGAA
AAAAACGAGCAGTTGCGAGCAAAAGTGATCAAAGCATTAATTTATCCCTGCATGGTCGTGCTGGTCGCGTTGGGTGTCTC
TTATTTAATGCTGACTCAGGTTATTCCCGAATTTCGCAAAATGTTCACCGGATTCGGCGCAGAACTGCCTTGGTTTACGC
AAAAAGTCTTAGACCTGTCTGATTTTGTGCAGGCCTACAGCAGTTGGTTTTTCATTACGCTGTTCAGTGCCATTTATTTA
CTGCGCGGTCTAAGTCGCAAGTCTCCCGCATTTCGGCTTAAACTCTCGCGACTAAGCTTGAAAATTCCAGTGATTGGTGG
GGTCTTATCTAAAGCGGCGATTGCCAAATTTAGCCGCACATTGGCCACCAGCTTCAGTGCAGGTATCCCGATCCTCACCA
GTTTAAAAACCACCAGTAAAACCGCTGGCAATCTACATTACCAATATGCGATTGAAGATGTTTATCGTGACACCGCTGCC
GGGATGCCAATGTACATCGCCATGCGCAACAGCCTTGCTTTCCCAGAATTGGTGCTGCAAATGGTGATGATTGGTGAAGA
ATCTGGCCAAATGGACGATATGCTGAACAAGATTGCCACCATCTATGAGTTTGAAGTGGATAACACCGTCGACAACCTCG
GTAAAATTCTCGAGCCGTTGATCATCGTCTTTCTGGGCGTTGTCGTCGGCGGATTGGTCACCGCAATGTACTTGCCGATC
TTTAATTTAATGAGTGTTCTGGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

78.25

98.039

0.767
  pilC Vibrio campbellii strain DS40M4

74.813

98.284

0.735
  pilC Pseudomonas stutzeri DSM 10701

41.337

99.02

0.409
  pilG Neisseria gonorrhoeae MS11

40.796

98.529

0.402
  pilC Acinetobacter baumannii D1279779

39.756

100

0.4
  pilG Neisseria meningitidis 44/76-A

40.547

98.529

0.4
  pilC Acinetobacter baylyi ADP1

40.602

97.794

0.397
  pilC Legionella pneumophila strain ERS1305867

40.099

99.02

0.397

Multiple sequence alignment