Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | FORC36_RS12710 | Genome accession | NZ_CP015512 |
| Coordinates | 2653077..2653946 (+) | Length | 289 a.a. |
| NCBI ID | WP_011079548.1 | Uniprot ID | Q56740 |
| Organism | Vibrio vulnificus strain FORC_036 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 2648077..2658946
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FORC36_RS12690 (FORC36_2387) | nadC | 2648443..2649330 (+) | 888 | WP_013571142.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| FORC36_RS12695 (FORC36_2388) | pilA | 2649553..2650020 (+) | 468 | WP_045596840.1 | pilin | Machinery gene |
| FORC36_RS12700 (FORC36_2389) | pilB | 2650020..2651708 (+) | 1689 | WP_045596841.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| FORC36_RS12705 (FORC36_2390) | pilC | 2651757..2652983 (+) | 1227 | WP_085761331.1 | type II secretion system F family protein | Machinery gene |
| FORC36_RS12710 (FORC36_2391) | pilD | 2653077..2653946 (+) | 870 | WP_011079548.1 | prepilin peptidase | Machinery gene |
| FORC36_RS12715 (FORC36_2392) | coaE | 2653948..2654556 (+) | 609 | WP_045596843.1 | dephospho-CoA kinase | - |
| FORC36_RS12720 (FORC36_2393) | zapD | 2654589..2655329 (+) | 741 | WP_045596844.1 | cell division protein ZapD | - |
| FORC36_RS12725 (FORC36_2394) | yacG | 2655392..2655586 (+) | 195 | WP_026060801.1 | DNA gyrase inhibitor YacG | - |
| FORC36_RS12730 (FORC36_2395) | rplS | 2655788..2656141 (-) | 354 | WP_011079544.1 | 50S ribosomal protein L19 | - |
| FORC36_RS12735 (FORC36_2396) | trmD | 2656183..2656932 (-) | 750 | WP_011079543.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| FORC36_RS12740 (FORC36_2397) | rimM | 2656960..2657508 (-) | 549 | WP_011079542.1 | ribosome maturation factor RimM | - |
| FORC36_RS12745 (FORC36_2398) | rpsP | 2657524..2657772 (-) | 249 | WP_011079541.1 | 30S ribosomal protein S16 | - |
Sequence
Protein
Download Length: 289 a.a. Molecular weight: 32295.30 Da Isoelectric Point: 6.4630
>NTDB_id=180219 FORC36_RS12710 WP_011079548.1 2653077..2653946(+) (pilD) [Vibrio vulnificus strain FORC_036]
MDALQYYPWLYIGLASLFGLLVGSFLNVVIYRLPKIMELEWRQECAESFPEYNITPPTETLTLSTPRSSCPSCHTPIRVR
DNIPVFSWLALRGKCHHCQTKISARYPFVEALSAFLCGLVAWKFGYAPITVALIGFTLVLIAATFIDLDTMLLPDQLTLP
LTWTGIALALLEISPVSLQDSVFGAMAGYLCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGWQYLPMIILLSSVVGL
IFGLIQLRLQKQGIEMAFPFGPYLAIAGWVALMWGDSLMSWYLNYLIGA
MDALQYYPWLYIGLASLFGLLVGSFLNVVIYRLPKIMELEWRQECAESFPEYNITPPTETLTLSTPRSSCPSCHTPIRVR
DNIPVFSWLALRGKCHHCQTKISARYPFVEALSAFLCGLVAWKFGYAPITVALIGFTLVLIAATFIDLDTMLLPDQLTLP
LTWTGIALALLEISPVSLQDSVFGAMAGYLCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGWQYLPMIILLSSVVGL
IFGLIQLRLQKQGIEMAFPFGPYLAIAGWVALMWGDSLMSWYLNYLIGA
Nucleotide
Download Length: 870 bp
>NTDB_id=180219 FORC36_RS12710 WP_011079548.1 2653077..2653946(+) (pilD) [Vibrio vulnificus strain FORC_036]
ATGGACGCGTTACAATACTACCCTTGGCTTTATATTGGTTTAGCTTCCCTGTTTGGCTTACTGGTAGGCAGCTTTCTTAA
CGTCGTCATCTACCGTCTACCGAAAATAATGGAACTGGAATGGCGCCAAGAGTGTGCAGAGTCCTTTCCTGAATACAACA
TCACACCACCGACAGAAACCCTAACATTAAGCACGCCGCGTTCAAGTTGCCCTTCGTGCCATACCCCAATACGAGTTCGA
GATAATATTCCTGTCTTTAGTTGGCTAGCTCTAAGAGGAAAATGTCACCATTGCCAGACGAAAATCAGTGCTCGCTATCC
TTTTGTTGAAGCACTGAGCGCCTTCTTGTGCGGCCTAGTCGCTTGGAAGTTCGGTTATGCACCGATTACCGTAGCACTGA
TTGGTTTTACTTTGGTGTTGATCGCCGCCACCTTCATCGACTTAGATACCATGCTACTGCCTGATCAACTGACACTGCCG
CTGACGTGGACAGGCATCGCGCTAGCGTTACTAGAGATAAGCCCAGTATCTCTGCAAGATTCAGTGTTCGGTGCGATGGC
AGGCTATCTCTGCCTTTGGAGCGTTTATCACCTTTTCAGATTGCTGACAGGGAAAGAAGGCATGGGTTACGGAGACTTTA
AATTGCTTGCGGCACTTGGAGCTTGGCTCGGCTGGCAATATCTACCGATGATCATCTTACTTTCTTCGGTTGTCGGGCTG
ATCTTTGGTCTCATTCAACTCAGATTGCAAAAGCAAGGTATTGAGATGGCTTTTCCATTTGGGCCTTATCTGGCCATTGC
TGGTTGGGTCGCCTTGATGTGGGGAGATAGCTTGATGTCTTGGTATCTCAACTATCTTATAGGGGCGTAA
ATGGACGCGTTACAATACTACCCTTGGCTTTATATTGGTTTAGCTTCCCTGTTTGGCTTACTGGTAGGCAGCTTTCTTAA
CGTCGTCATCTACCGTCTACCGAAAATAATGGAACTGGAATGGCGCCAAGAGTGTGCAGAGTCCTTTCCTGAATACAACA
TCACACCACCGACAGAAACCCTAACATTAAGCACGCCGCGTTCAAGTTGCCCTTCGTGCCATACCCCAATACGAGTTCGA
GATAATATTCCTGTCTTTAGTTGGCTAGCTCTAAGAGGAAAATGTCACCATTGCCAGACGAAAATCAGTGCTCGCTATCC
TTTTGTTGAAGCACTGAGCGCCTTCTTGTGCGGCCTAGTCGCTTGGAAGTTCGGTTATGCACCGATTACCGTAGCACTGA
TTGGTTTTACTTTGGTGTTGATCGCCGCCACCTTCATCGACTTAGATACCATGCTACTGCCTGATCAACTGACACTGCCG
CTGACGTGGACAGGCATCGCGCTAGCGTTACTAGAGATAAGCCCAGTATCTCTGCAAGATTCAGTGTTCGGTGCGATGGC
AGGCTATCTCTGCCTTTGGAGCGTTTATCACCTTTTCAGATTGCTGACAGGGAAAGAAGGCATGGGTTACGGAGACTTTA
AATTGCTTGCGGCACTTGGAGCTTGGCTCGGCTGGCAATATCTACCGATGATCATCTTACTTTCTTCGGTTGTCGGGCTG
ATCTTTGGTCTCATTCAACTCAGATTGCAAAAGCAAGGTATTGAGATGGCTTTTCCATTTGGGCCTTATCTGGCCATTGC
TGGTTGGGTCGCCTTGATGTGGGGAGATAGCTTGATGTCTTGGTATCTCAACTATCTTATAGGGGCGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio campbellii strain DS40M4 |
77.163 |
100 |
0.772 |
| pilD | Vibrio cholerae strain A1552 |
71.528 |
99.654 |
0.713 |
| pilD | Acinetobacter nosocomialis M2 |
54.348 |
95.502 |
0.519 |
| pilD | Acinetobacter baumannii D1279779 |
54.348 |
95.502 |
0.519 |
| pilD | Neisseria gonorrhoeae MS11 |
48 |
95.156 |
0.457 |