Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | FORC36_RS12695 | Genome accession | NZ_CP015512 |
| Coordinates | 2649553..2650020 (+) | Length | 155 a.a. |
| NCBI ID | WP_045596840.1 | Uniprot ID | - |
| Organism | Vibrio vulnificus strain FORC_036 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2644553..2655020
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FORC36_RS12680 (FORC36_2385) | pdhR | 2646622..2647389 (-) | 768 | WP_011079554.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| FORC36_RS12685 (FORC36_2386) | ampD | 2647778..2648350 (-) | 573 | WP_013571143.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| FORC36_RS12690 (FORC36_2387) | nadC | 2648443..2649330 (+) | 888 | WP_013571142.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| FORC36_RS12695 (FORC36_2388) | pilA | 2649553..2650020 (+) | 468 | WP_045596840.1 | pilin | Machinery gene |
| FORC36_RS12700 (FORC36_2389) | pilB | 2650020..2651708 (+) | 1689 | WP_045596841.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| FORC36_RS12705 (FORC36_2390) | pilC | 2651757..2652983 (+) | 1227 | WP_085761331.1 | type II secretion system F family protein | Machinery gene |
| FORC36_RS12710 (FORC36_2391) | pilD | 2653077..2653946 (+) | 870 | WP_011079548.1 | prepilin peptidase | Machinery gene |
| FORC36_RS12715 (FORC36_2392) | coaE | 2653948..2654556 (+) | 609 | WP_045596843.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 155 a.a. Molecular weight: 16386.98 Da Isoelectric Point: 9.3727
>NTDB_id=180216 FORC36_RS12695 WP_045596840.1 2649553..2650020(+) (pilA) [Vibrio vulnificus strain FORC_036]
MKKLNKTKKQQGFTLIELMIVVAIIGILAAFAIPAYQDYTKRATMAEFPRVASSTKLAVELCAHEHAADGAGFKSKCYLA
ANGIPAEFTLNNLKVTPTTGTASGSVDITVAATTDKGSIKTGEKYILTATYNTTGITWKAVCKDAGGTVQTAYCP
MKKLNKTKKQQGFTLIELMIVVAIIGILAAFAIPAYQDYTKRATMAEFPRVASSTKLAVELCAHEHAADGAGFKSKCYLA
ANGIPAEFTLNNLKVTPTTGTASGSVDITVAATTDKGSIKTGEKYILTATYNTTGITWKAVCKDAGGTVQTAYCP
Nucleotide
Download Length: 468 bp
>NTDB_id=180216 FORC36_RS12695 WP_045596840.1 2649553..2650020(+) (pilA) [Vibrio vulnificus strain FORC_036]
ATGAAGAAATTGAACAAAACCAAGAAACAACAAGGTTTTACCTTGATTGAATTAATGATAGTGGTGGCGATTATTGGTAT
TTTGGCCGCCTTTGCTATTCCTGCTTATCAAGACTACACAAAGAGAGCTACTATGGCCGAGTTTCCGAGAGTAGCGTCTT
CAACAAAATTAGCAGTCGAACTTTGCGCTCACGAACATGCAGCAGATGGAGCTGGATTCAAGTCAAAATGCTACCTAGCA
GCAAATGGCATTCCTGCAGAGTTTACGTTAAACAACTTAAAAGTAACTCCAACCACAGGAACTGCATCAGGTTCCGTTGA
CATTACAGTAGCAGCAACAACAGATAAAGGCTCTATTAAGACCGGTGAAAAGTATATTCTTACCGCAACCTATAACACTA
CCGGCATTACATGGAAAGCAGTTTGTAAAGATGCTGGTGGCACAGTACAAACAGCCTACTGTCCATAA
ATGAAGAAATTGAACAAAACCAAGAAACAACAAGGTTTTACCTTGATTGAATTAATGATAGTGGTGGCGATTATTGGTAT
TTTGGCCGCCTTTGCTATTCCTGCTTATCAAGACTACACAAAGAGAGCTACTATGGCCGAGTTTCCGAGAGTAGCGTCTT
CAACAAAATTAGCAGTCGAACTTTGCGCTCACGAACATGCAGCAGATGGAGCTGGATTCAAGTCAAAATGCTACCTAGCA
GCAAATGGCATTCCTGCAGAGTTTACGTTAAACAACTTAAAAGTAACTCCAACCACAGGAACTGCATCAGGTTCCGTTGA
CATTACAGTAGCAGCAACAACAGATAAAGGCTCTATTAAGACCGGTGAAAAGTATATTCTTACCGCAACCTATAACACTA
CCGGCATTACATGGAAAGCAGTTTGTAAAGATGCTGGTGGCACAGTACAAACAGCCTACTGTCCATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio campbellii strain DS40M4 |
75.163 |
98.71 |
0.742 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
41.892 |
95.484 |
0.4 |
| pilA2 | Legionella pneumophila str. Paris |
41.892 |
95.484 |
0.4 |
| pilA | Haemophilus influenzae 86-028NP |
39.583 |
92.903 |
0.368 |
| comP | Acinetobacter baylyi ADP1 |
43.077 |
83.871 |
0.361 |
| pilA | Glaesserella parasuis strain SC1401 |
38.095 |
94.839 |
0.361 |