Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | GFC30_RS02130 | Genome accession | NZ_CP015438 |
| Coordinates | 422869..423213 (+) | Length | 114 a.a. |
| NCBI ID | WP_066322694.1 | Uniprot ID | A0A161HXQ9 |
| Organism | Anoxybacteroides amylolyticum strain DSM 15939 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 417869..428213
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GFC30_RS02100 (GFC30_429) | - | 418232..418732 (+) | 501 | WP_409978492.1 | competence protein ComK | - |
| GFC30_RS02105 (GFC30_430) | - | 418803..419285 (+) | 483 | WP_066322689.1 | DUF1284 domain-containing protein | - |
| GFC30_RS02110 (GFC30_431) | - | 419314..420681 (+) | 1368 | WP_066322690.1 | aspartate kinase | - |
| GFC30_RS02115 (GFC30_432) | - | 420760..421671 (+) | 912 | WP_066322691.1 | processed acidic surface protein | - |
| GFC30_RS02120 (GFC30_434) | - | 421671..422186 (+) | 516 | WP_066322692.1 | class D sortase | - |
| GFC30_RS02125 (GFC30_433) | - | 422166..422606 (-) | 441 | WP_066322693.1 | YwpF-like family protein | - |
| GFC30_RS02130 (GFC30_435) | ssbB | 422869..423213 (+) | 345 | WP_066322694.1 | single-stranded DNA-binding protein | Machinery gene |
| GFC30_RS02135 (GFC30_436) | - | 423370..423780 (-) | 411 | WP_066322695.1 | helix-turn-helix domain-containing protein | - |
| GFC30_RS02140 (GFC30_437) | - | 423979..424455 (+) | 477 | WP_338012310.1 | hypothetical protein | - |
| GFC30_RS02145 (GFC30_439) | - | 424601..427351 (-) | 2751 | WP_066322696.1 | DEAD/DEAH box helicase | - |
Sequence
Protein
Download Length: 114 a.a. Molecular weight: 12688.48 Da Isoelectric Point: 9.6276
>NTDB_id=179762 GFC30_RS02130 WP_066322694.1 422869..423213(+) (ssbB) [Anoxybacteroides amylolyticum strain DSM 15939]
MINQVVLVGRLTKDPELRYTADGAAVVNVTLAVSRNFRNAEGVVDTDFVHCTLWRKVAENTAQYCRKGSIIGVTGRIQTR
SYENKDGKRMHVTEVVAESVRFMGGKTTAWVAQE
MINQVVLVGRLTKDPELRYTADGAAVVNVTLAVSRNFRNAEGVVDTDFVHCTLWRKVAENTAQYCRKGSIIGVTGRIQTR
SYENKDGKRMHVTEVVAESVRFMGGKTTAWVAQE
Nucleotide
Download Length: 345 bp
>NTDB_id=179762 GFC30_RS02130 WP_066322694.1 422869..423213(+) (ssbB) [Anoxybacteroides amylolyticum strain DSM 15939]
ATGATTAACCAAGTCGTGCTTGTCGGGCGTTTAACGAAAGATCCAGAACTTCGGTATACGGCCGATGGCGCAGCCGTTGT
GAACGTGACGCTTGCGGTGAGCCGCAACTTCCGCAATGCGGAAGGAGTCGTTGATACCGACTTTGTGCATTGCACGCTTT
GGCGGAAAGTGGCGGAAAATACCGCGCAATATTGCCGAAAAGGGTCGATTATCGGTGTGACGGGTCGCATCCAGACAAGA
AGCTACGAAAATAAAGACGGGAAGCGGATGCATGTGACCGAAGTCGTTGCGGAGTCGGTTCGATTTATGGGCGGAAAAAC
AACCGCGTGGGTTGCGCAAGAGTAA
ATGATTAACCAAGTCGTGCTTGTCGGGCGTTTAACGAAAGATCCAGAACTTCGGTATACGGCCGATGGCGCAGCCGTTGT
GAACGTGACGCTTGCGGTGAGCCGCAACTTCCGCAATGCGGAAGGAGTCGTTGATACCGACTTTGTGCATTGCACGCTTT
GGCGGAAAGTGGCGGAAAATACCGCGCAATATTGCCGAAAAGGGTCGATTATCGGTGTGACGGGTCGCATCCAGACAAGA
AGCTACGAAAATAAAGACGGGAAGCGGATGCATGTGACCGAAGTCGTTGCGGAGTCGGTTCGATTTATGGGCGGAAAAAC
AACCGCGTGGGTTGCGCAAGAGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
67.925 |
92.982 |
0.632 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
59.813 |
93.86 |
0.561 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.63 |
94.737 |
0.518 |
| ssbA | Streptococcus mutans UA159 |
43.689 |
90.351 |
0.395 |
| ssb | Neisseria gonorrhoeae MS11 |
40.741 |
94.737 |
0.386 |
| ssb | Neisseria meningitidis MC58 |
40.741 |
94.737 |
0.386 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
42.718 |
90.351 |
0.386 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
40.777 |
90.351 |
0.368 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
40.777 |
90.351 |
0.368 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
39.252 |
93.86 |
0.368 |