Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A4V06_RS02875 Genome accession   NZ_CP015410
Coordinates   636009..636461 (-) Length   150 a.a.
NCBI ID   WP_065535855.1    Uniprot ID   -
Organism   Enterococcus faecalis strain KB1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 631009..641461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4V06_RS02855 (A4V06_00295) - 631631..632944 (-) 1314 WP_065536159.1 hypothetical protein -
  A4V06_RS15660 - 632934..633065 (-) 132 WP_002368288.1 hypothetical protein -
  A4V06_RS02860 (A4V06_00290) - 633773..635173 (-) 1401 WP_080476171.1 DNA cytosine methyltransferase -
  A4V06_RS02865 (A4V06_00285) - 635253..635831 (-) 579 WP_065535857.1 thermonuclease family protein -
  A4V06_RS02870 (A4V06_00280) - 635843..635995 (-) 153 WP_065535856.1 hypothetical protein -
  A4V06_RS02875 (A4V06_00275) ssb 636009..636461 (-) 453 WP_065535855.1 single-stranded DNA-binding protein Machinery gene
  A4V06_RS02880 (A4V06_00270) - 636527..637021 (-) 495 WP_080476170.1 PcfR -
  A4V06_RS02885 (A4V06_00265) - 637076..637306 (+) 231 WP_002360849.1 hypothetical protein -
  A4V06_RS02900 (A4V06_00255) - 637872..638057 (+) 186 WP_002360847.1 hypothetical protein -
  A4V06_RS02905 (A4V06_00250) - 638042..638233 (+) 192 WP_025191432.1 DpnD/PcfM family protein -
  A4V06_RS02910 (A4V06_00245) - 638257..638847 (+) 591 WP_002360842.1 hypothetical protein -
  A4V06_RS02915 (A4V06_00240) - 638952..639725 (+) 774 WP_065535854.1 Cas9 inhibitor AcrIIA9 family protein -
  A4V06_RS02920 (A4V06_00235) - 639725..641068 (+) 1344 WP_065535853.1 PcfJ domain-containing protein -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 16852.74 Da        Isoelectric Point: 4.7472

>NTDB_id=179264 A4V06_RS02875 WP_065535855.1 636009..636461(-) (ssb) [Enterococcus faecalis strain KB1]
MINNVTLVGRLTKDCDLRYTSSGVAVAAFTLEVNRNFTNQNGEREADYIQCVIWRKPAETLANYTRKGTLIGLVGRLQTR
NYENQQGQRIYVTEVVVESFQLLESKEVSQQRGVNASNPTPVGQQESNTQQPFPDLEGSSIEISDHDLPF

Nucleotide


Download         Length: 453 bp        

>NTDB_id=179264 A4V06_RS02875 WP_065535855.1 636009..636461(-) (ssb) [Enterococcus faecalis strain KB1]
ATGATTAATAATGTGACTTTAGTAGGAAGACTTACAAAAGACTGTGATTTGCGTTATACGTCAAGTGGTGTAGCTGTTGC
GGCTTTTACACTAGAAGTTAACCGGAATTTTACAAATCAAAATGGTGAACGTGAAGCAGACTATATTCAGTGTGTGATTT
GGCGTAAGCCTGCAGAAACTTTAGCAAACTATACACGAAAAGGAACATTGATTGGTCTTGTGGGTAGACTTCAAACACGT
AACTATGAGAATCAACAAGGACAACGTATTTATGTGACAGAAGTGGTTGTAGAAAGCTTCCAATTGTTAGAGTCAAAAGA
AGTTAGTCAACAACGTGGCGTTAACGCTTCTAATCCTACACCAGTTGGACAGCAGGAAAGCAATACGCAACAACCCTTTC
CAGATTTAGAAGGTAGTTCTATTGAGATTTCAGATCATGACTTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

54.386

100

0.62
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.445

100

0.593
  ssbB/cilA Streptococcus pneumoniae TIGR4

43.333

100

0.433
  ssbB/cilA Streptococcus pneumoniae Rx1

42.667

100

0.427
  ssbB/cilA Streptococcus mitis NCTC 12261

42.667

100

0.427
  ssbB/cilA Streptococcus pneumoniae D39

42.667

100

0.427
  ssbB/cilA Streptococcus pneumoniae R6

42.667

100

0.427
  ssbB/cilA Streptococcus mitis SK321

42.667

100

0.427
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

70.667

0.407
  ssbA Streptococcus mutans UA159

39.333

100

0.393
  ssbB Streptococcus sobrinus strain NIDR 6715-7

46.61

78.667

0.367

Multiple sequence alignment