Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | V471_RS01900 | Genome accession | NZ_CP015283 |
| Coordinates | 382282..382674 (-) | Length | 130 a.a. |
| NCBI ID | WP_014632554.1 | Uniprot ID | A0AB37DE84 |
| Organism | Streptococcus salivarius strain ATCC 25975 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 377282..387674
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V471_RS01860 (V471_01865) | dapD | 377351..378049 (-) | 699 | WP_002886999.1 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase | - |
| V471_RS01865 (V471_01870) | - | 378135..378887 (-) | 753 | WP_002887000.1 | HAD family hydrolase | - |
| V471_RS01870 (V471_01875) | - | 379001..379840 (-) | 840 | WP_002887001.1 | methyltransferase domain-containing protein | - |
| V471_RS01880 (V471_01885) | - | 380261..380419 (+) | 159 | WP_002885650.1 | class IIb bacteriocin, lactobin A/cerein 7B family | - |
| V471_RS01885 (V471_01890) | - | 380439..380606 (+) | 168 | WP_002887002.1 | class IIb bacteriocin, lactobin A/cerein 7B family | - |
| V471_RS01890 (V471_01895) | - | 380654..380908 (+) | 255 | WP_045001373.1 | hypothetical protein | - |
| V471_RS01895 (V471_01900) | tadA | 380994..381512 (-) | 519 | WP_014632555.1 | tRNA adenosine(34) deaminase TadA | - |
| V471_RS01900 (V471_01905) | ssbA | 382282..382674 (-) | 393 | WP_014632554.1 | single-stranded DNA-binding protein | Machinery gene |
| V471_RS01905 (V471_01910) | - | 383102..383779 (-) | 678 | WP_045001371.1 | CPBP family intramembrane glutamic endopeptidase | - |
| V471_RS01910 (V471_01915) | ytpR | 384045..384668 (-) | 624 | WP_002885779.1 | YtpR family tRNA-binding protein | - |
| V471_RS01915 (V471_01920) | - | 384700..385224 (-) | 525 | WP_014632552.1 | hypothetical protein | - |
| V471_RS01920 (V471_01925) | - | 385228..385542 (-) | 315 | WP_002885723.1 | thioredoxin family protein | - |
| V471_RS01925 (V471_01930) | - | 385539..385823 (-) | 285 | WP_002885838.1 | DUF4651 domain-containing protein | - |
| V471_RS01930 (V471_01935) | pepA | 385923..386990 (+) | 1068 | WP_014632550.1 | glutamyl aminopeptidase | - |
Sequence
Protein
Download Length: 130 a.a. Molecular weight: 14759.71 Da Isoelectric Point: 6.9843
>NTDB_id=178270 V471_RS01900 WP_014632554.1 382282..382674(-) (ssbA) [Streptococcus salivarius strain ATCC 25975]
MYNKVILIGRLTATPEMVKTASDRSFTRVTVAVNRRYKTQNGEREADFITVVVWGRLAETLASYASKGSLISLDGELRTR
KYDKDGKTHYVTEVLCSSFQLLESRAQRAVRENNPDNDLADLVLEEELPF
MYNKVILIGRLTATPEMVKTASDRSFTRVTVAVNRRYKTQNGEREADFITVVVWGRLAETLASYASKGSLISLDGELRTR
KYDKDGKTHYVTEVLCSSFQLLESRAQRAVRENNPDNDLADLVLEEELPF
Nucleotide
Download Length: 393 bp
>NTDB_id=178270 V471_RS01900 WP_014632554.1 382282..382674(-) (ssbA) [Streptococcus salivarius strain ATCC 25975]
ATGTATAACAAAGTTATTTTAATTGGACGTTTGACGGCGACTCCTGAAATGGTAAAAACTGCTAGCGATAGGTCTTTTAC
ACGTGTTACAGTTGCGGTTAATCGTCGCTATAAGACGCAAAATGGTGAGCGTGAGGCTGATTTTATTACAGTGGTTGTCT
GGGGGCGTTTGGCTGAGACCTTAGCATCTTATGCTAGCAAGGGGAGTTTAATTTCTCTTGATGGTGAGCTTCGTACCCGT
AAGTACGATAAGGATGGTAAAACTCATTACGTTACTGAAGTGCTTTGTTCCTCTTTCCAACTTCTGGAGAGTCGTGCTCA
GCGTGCTGTTAGGGAAAATAATCCTGATAATGACTTGGCTGACCTCGTCTTGGAAGAAGAGCTTCCCTTCTAG
ATGTATAACAAAGTTATTTTAATTGGACGTTTGACGGCGACTCCTGAAATGGTAAAAACTGCTAGCGATAGGTCTTTTAC
ACGTGTTACAGTTGCGGTTAATCGTCGCTATAAGACGCAAAATGGTGAGCGTGAGGCTGATTTTATTACAGTGGTTGTCT
GGGGGCGTTTGGCTGAGACCTTAGCATCTTATGCTAGCAAGGGGAGTTTAATTTCTCTTGATGGTGAGCTTCGTACCCGT
AAGTACGATAAGGATGGTAAAACTCATTACGTTACTGAAGTGCTTTGTTCCTCTTTCCAACTTCTGGAGAGTCGTGCTCA
GCGTGCTGTTAGGGAAAATAATCCTGATAATGACTTGGCTGACCTCGTCTTGGAAGAAGAGCTTCCCTTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Streptococcus mutans UA159 |
80.916 |
100 |
0.815 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
75.573 |
100 |
0.762 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
75.573 |
100 |
0.762 |
| ssbB/cilA | Streptococcus mitis SK321 |
74.809 |
100 |
0.754 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
74.809 |
100 |
0.754 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
74.809 |
100 |
0.754 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
74.809 |
100 |
0.754 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
73.282 |
100 |
0.738 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
60.714 |
86.154 |
0.523 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
47.17 |
81.538 |
0.385 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
46.226 |
81.538 |
0.377 |