Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   A4265_RS00725 Genome accession   NZ_CP015238
Coordinates   120997..121392 (+) Length   131 a.a.
NCBI ID   WP_063631717.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain NS53     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 115997..126392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4265_RS00690 (A4265_08495) - 116863..117171 (+) 309 Protein_114 hypothetical protein -
  A4265_RS00695 (A4265_00600) proC 117254..118024 (-) 771 WP_063631714.1 pyrroline-5-carboxylate reductase -
  A4265_RS00700 (A4265_00605) pepA 118072..119139 (-) 1068 WP_063631715.1 glutamyl aminopeptidase -
  A4265_RS00710 (A4265_00610) - 119604..119885 (+) 282 WP_024623420.1 DUF4651 domain-containing protein -
  A4265_RS00715 (A4265_00615) - 119885..120202 (+) 318 WP_002987805.1 thioredoxin family protein -
  A4265_RS00720 (A4265_00620) ytpR 120220..120846 (+) 627 WP_063631716.1 YtpR family tRNA-binding protein -
  A4265_RS00725 (A4265_00625) ssbA 120997..121392 (+) 396 WP_063631717.1 single-stranded DNA-binding protein Machinery gene
  A4265_RS00735 (A4265_00635) - 121652..122293 (-) 642 WP_063631719.1 deoxynucleoside kinase -
  A4265_RS00740 (A4265_00640) dusB 122313..123290 (-) 978 WP_063631720.1 tRNA dihydrouridine synthase DusB -
  A4265_RS00745 (A4265_00645) hslO 123277..124149 (-) 873 WP_012766459.1 Hsp33 family molecular chaperone HslO -
  A4265_RS00750 (A4265_00650) nra 124275..125810 (-) 1536 WP_063631721.1 transcriptional regulator Nra -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14801.98 Da        Isoelectric Point: 8.0157

>NTDB_id=177882 A4265_RS00725 WP_063631717.1 120997..121392(+) (ssbA) [Streptococcus pyogenes strain NS53]
MYNKVIAIGRLVAKPELLKTATDKHVARLSLAVNRRFKNASGEREADFISVVVWGKLAETLVSYASKGSLMSIDGELRTR
KYDKDGQVHYVTEVLCQSFQLLESRAQRAMRENNVTNDLVDLVLEEDTLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=177882 A4265_RS00725 WP_063631717.1 120997..121392(+) (ssbA) [Streptococcus pyogenes strain NS53]
ATGTATAATAAAGTGATAGCAATCGGTCGTTTGGTAGCTAAACCAGAATTGTTAAAAACAGCTACGGATAAGCATGTAGC
ACGTCTCTCTTTAGCTGTTAATCGAAGATTTAAAAATGCTTCGGGAGAGCGAGAAGCGGATTTTATCTCTGTTGTTGTTT
GGGGAAAGTTAGCTGAAACCTTGGTTTCTTATGCTAGCAAAGGTAGTTTGATGTCTATTGATGGCGAACTTAGGACCCGC
AAGTATGATAAAGATGGGCAAGTGCATTATGTGACAGAAGTTCTCTGCCAATCATTTCAACTGCTTGAAAGTCGTGCTCA
ACGCGCTATGAGAGAAAATAATGTTACTAATGATCTAGTTGATTTAGTCTTAGAAGAAGATACTCTTCCCTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

73.282

100

0.733
  ssbB Streptococcus sobrinus strain NIDR 6715-7

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae Rx1

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae D39

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae R6

70.229

100

0.702
  ssbB/cilA Streptococcus mitis NCTC 12261

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae TIGR4

70.229

100

0.702
  ssbB/cilA Streptococcus mitis SK321

69.466

100

0.695
  ssbB Lactococcus lactis subsp. cremoris KW2

62.281

87.023

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

46.903

86.26

0.405
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.057

80.916

0.397

Multiple sequence alignment