Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   IEC338SC_RS03965 Genome accession   NZ_CP015145
Coordinates   822244..823470 (-) Length   408 a.a.
NCBI ID   WP_063098007.1    Uniprot ID   A0AB33BK57
Organism   Acinetobacter pittii strain IEC338SC     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 817244..828470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IEC338SC_RS03935 (IEC338SC_0792) - 817274..818584 (+) 1311 WP_063098003.1 tetratricopeptide repeat protein -
  IEC338SC_RS03940 (IEC338SC_0793) - 818661..818987 (+) 327 WP_002115102.1 pyrimidine/purine nucleoside phosphorylase -
  IEC338SC_RS03945 (IEC338SC_0794) rlmB 819090..819839 (+) 750 WP_005079348.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  IEC338SC_RS03950 (IEC338SC_0795) - 819875..820789 (+) 915 WP_063098004.1 DMT family transporter -
  IEC338SC_RS03955 (IEC338SC_0796) coaE 820786..821382 (-) 597 WP_063098005.1 dephospho-CoA kinase -
  IEC338SC_RS03960 (IEC338SC_0797) pilD 821384..822244 (-) 861 WP_063098006.1 prepilin peptidase Machinery gene
  IEC338SC_RS03965 (IEC338SC_0798) pilC 822244..823470 (-) 1227 WP_063098007.1 type II secretion system F family protein Machinery gene
  IEC338SC_RS03970 (IEC338SC_0799) pilB 823497..825209 (-) 1713 WP_063098008.1 type IV-A pilus assembly ATPase PilB Machinery gene
  IEC338SC_RS03975 (IEC338SC_0800) tpiA 825501..826295 (+) 795 WP_005079338.1 triose-phosphate isomerase -
  IEC338SC_RS03980 (IEC338SC_0801) secG 826308..826637 (+) 330 WP_002115012.1 preprotein translocase subunit SecG -
  IEC338SC_RS04000 (IEC338SC_0805) rimP 827275..827799 (+) 525 WP_002114922.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45013.42 Da        Isoelectric Point: 9.8207

>NTDB_id=177097 IEC338SC_RS03965 WP_063098007.1 822244..823470(-) (pilC) [Acinetobacter pittii strain IEC338SC]
MTVKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRNIREKRKNILEGLFKKKVSTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVVVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSKWMQEYWFIMIIVIGAIIA
AFLEAKKRSKKFRDGLDKLTLKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEEAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVVAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=177097 IEC338SC_RS03965 WP_063098007.1 822244..823470(-) (pilC) [Acinetobacter pittii strain IEC338SC]
ATGACTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATTAAGGGAGA
ACTTCCAGCTAAGAATATGGCCTTAGCCAAAGTCACCCTACGCAAACAAGGTGTAACTGTCCGTAATATTCGGGAAAAGC
GTAAAAATATTCTTGAGGGTTTGTTCAAGAAGAAAGTATCAACGCTCGATATCACGATTTTCACGCGACAACTTGCAACC
ATGATGAAAGCAGGTGTCCCACTGGTACAAGGCTTTGAAATTGTAGCGGAGGGTCTAGAAAACCCAGCCATGCGCGAGGT
GGTACTCGGGATTAAAGGTGAGGTTGAAGGTGGTAGTACCTTTGCCTCAGCTTTAAGAAAGTATCCTCAACACTTCGATA
ACTTGTTTTGTTCTCTTGTAGAGTCTGGCGAACAATCTGGTGCGCTTGAAACCATGTTGGACCGTGTGGCAATTTACAAA
GAAAAAAGTGAATTACTTAAGCAGAAAATTAAGAAGGCTATGAAATATCCAGCAACGGTTATTGTAGTTGCTGTGGTTGT
TACCATTATTTTGATGGTTAAAGTAGTTCCTGTTTTCCAAGACCTATTTTCTTCTTTTGGTGCTGATTTACCAGCATTCA
CCCAAATGGTCGTGAACATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATTATTGTGATTGGGGCAATTATTGCC
GCATTTCTGGAAGCCAAGAAGCGTAGTAAAAAATTCCGTGATGGCTTAGACAAACTCACACTGAAACTACCTATCTTTGG
TGATCTGGTTTATAAGGCGATTATTGCCCGTTATAGCCGTACTTTAGCCACCACGTTTGCCGCTGGTGTTCCGCTCATTG
ATGCGCTTGAGTCAACGGCTGGTGCAACCAATAATGTCATTTATGAAGAAGCCGTCATGAAAATTCGTGAAGATGTTGCT
ACAGGCCAACAACTCCAATTTGCAATGCGTGTTTCAAATCGTTTCCCATCTATGGCTATACAAATGGTCGCAATTGGTGA
AGAATCTGGTGCACTAGACAGCATGCTCGATAAAGTTGCCACTTATTATGAAAATGAAGTTGATAATGCCGTTGATGGTT
TAACTTCAATGATGGAACCTTTAATCATGGCAATTTTAGGGGTACTTGTGGGTGGTCTGGTTGTTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTTGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

97.549

100

0.975
  pilC Acinetobacter baylyi ADP1

85.539

100

0.855
  pilC Pseudomonas stutzeri DSM 10701

59.506

99.265

0.591
  pilC Legionella pneumophila strain ERS1305867

53.086

99.265

0.527
  pilG Neisseria gonorrhoeae MS11

46.734

97.549

0.456
  pilG Neisseria meningitidis 44/76-A

46.734

97.549

0.456
  pilC Vibrio cholerae strain A1552

42.647

100

0.426
  pilC Vibrio campbellii strain DS40M4

40.587

100

0.407
  pilC Thermus thermophilus HB27

37.157

98.284

0.365

Multiple sequence alignment