Detailed information NTG0177096

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: IEC338SC_RS03960
• Genome accession: NZ_CP015145
• Coordinates: 821384..822244 (-)
• Length: 286 a.a.
• NCBI ID: WP_063098006.1
• Uniprot ID: A0AB33B799
• Organism: Acinetobacter pittii strain IEC338SC
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 816384..827244

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IEC338SC_RS03935 (IEC338SC_0792)	-	817274..818584 (+)	1311	WP_063098003.1	tetratricopeptide repeat protein	-
IEC338SC_RS03940 (IEC338SC_0793)	-	818661..818987 (+)	327	WP_002115102.1	pyrimidine/purine nucleoside phosphorylase	-
IEC338SC_RS03945 (IEC338SC_0794)	rlmB	819090..819839 (+)	750	WP_005079348.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
IEC338SC_RS03950 (IEC338SC_0795)	-	819875..820789 (+)	915	WP_063098004.1	DMT family transporter	-
IEC338SC_RS03955 (IEC338SC_0796)	coaE	820786..821382 (-)	597	WP_063098005.1	dephospho-CoA kinase	-
IEC338SC_RS03960 (IEC338SC_0797)	pilD	821384..822244 (-)	861	WP_063098006.1	prepilin peptidase	Machinery gene
IEC338SC_RS03965 (IEC338SC_0798)	pilC	822244..823470 (-)	1227	WP_063098007.1	type II secretion system F family protein	Machinery gene
IEC338SC_RS03970 (IEC338SC_0799)	pilB	823497..825209 (-)	1713	WP_063098008.1	type IV-A pilus assembly ATPase PilB	Machinery gene
IEC338SC_RS03975 (IEC338SC_0800)	tpiA	825501..826295 (+)	795	WP_005079338.1	triose-phosphate isomerase	-
IEC338SC_RS03980 (IEC338SC_0801)	secG	826308..826637 (+)	330	WP_002115012.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32225.75 Da
• Isoelectric Point: 7.1044

>NTDB_id=177096 IEC338SC_RS03960 WP_063098006.1 821384..822244(-) (pilD) [Acinetobacter pittii strain IEC338SC]
MQEIIAYFIQNLTALYIVVALLSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIEHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVIVFGPTLQMLWGLMLTWILIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYIIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=177096 IEC338SC_RS03960 WP_063098006.1 821384..822244(-) (pilD) [Acinetobacter pittii strain IEC338SC]
ATGCAAGAAATTATTGCTTATTTTATTCAAAACTTAACTGCACTTTATATTGTAGTTGCACTATTAAGCCTATGTATTGG
TAGTTTTTTGAATGTAGTGATTTATCGCACCCCAAAAATGATGGAACAAGATTGGCAGCAGGAATGTCAAATGTTGCTTA
ATCCCGAGCAACCCATCATTGAGCATGAAAAGCTGACATTAAGTAAACCTGCTTCATCATGTCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCAGTTATAAGCTGGTTAATGTTAAGAGGAAAATGTGGCCATTGCCAACATCCTATTAG
CATTCGTTATCCAGCGATTGAATTACTCACAATGCTATGTTCATTAGTAGTCGTCATCGTTTTTGGTCCAACCCTACAAA
TGCTTTGGGGGCTAATGCTCACTTGGATTTTGATTGCTTTAACATTTATAGACTTTGATACTCAGCTACTACCTGACCGT
TTCACCCTACCTTTGGCTGCTCTCGGCTTAGGTATTAATACCTTTAATATTTACACCTCACCCAACTCAGCCATTTGGGG
CTATATCATCGGTTTTCTATGTCTTTGGATTGTGTATTACTTATTTAAAGTGATTACAGGCAAAGAAGGTATGGGTTACG
GCGACTTTAAATTGCTTGCCGCATTAGGCGCGTGGATGGGGCCATTGATGCTGCCATTAATTGTGCTATTGTCATCTTTA
CTCGGTGCAATTATTGGCATCATTTTACTAAAATTACGTAATGATAATCAGCCCTTTGCGTTTGGGCCATATATTGCCAT
TGCGGGTTGGGTTGCCTTTTTATGGGGTGACCAAATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	95.455	100	0.955
pilD	Acinetobacter nosocomialis M2	95.105	100	0.951
pilD	Vibrio cholerae strain A1552	53.676	95.105	0.51
pilD	Vibrio campbellii strain DS40M4	52.92	95.804	0.507
pilD	Neisseria gonorrhoeae MS11	46.97	92.308	0.434