Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   A2G56_RS06420 Genome accession   NZ_CP014835
Coordinates   1437104..1437499 (-) Length   131 a.a.
NCBI ID   WP_018380740.1    Uniprot ID   -
Organism   Streptococcus halotolerans strain HTS9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1415806..1440796 1437104..1437499 within 0


Gene organization within MGE regions


Location: 1415806..1440796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A2G56_RS06340 - 1415806..1416825 (+) 1020 WP_172793788.1 IS30 family transposase -
  A2G56_RS06345 polA 1417130..1419766 (+) 2637 WP_062710537.1 DNA polymerase I -
  A2G56_RS06350 - 1420147..1421487 (-) 1341 WP_062710540.1 MFS transporter -
  A2G56_RS06355 - 1421602..1422594 (+) 993 WP_062710543.1 helix-turn-helix transcriptional regulator -
  A2G56_RS06360 - 1422633..1423892 (-) 1260 WP_062708466.1 ISL3 family transposase -
  A2G56_RS06365 - 1424196..1426646 (+) 2451 WP_062710546.1 SEC10/PgrA surface exclusion domain-containing protein -
  A2G56_RS06370 - 1426691..1428037 (+) 1347 WP_062710550.1 LPXTG cell wall anchor domain-containing protein -
  A2G56_RS10250 - 1428339..1428821 (+) 483 WP_157761206.1 DUF4767 domain-containing protein -
  A2G56_RS06385 - 1428846..1430054 (+) 1209 WP_062710558.1 DUF4767 domain-containing protein -
  A2G56_RS06390 groL 1430465..1432087 (-) 1623 WP_062710561.1 chaperonin GroEL -
  A2G56_RS06395 groES 1432243..1432527 (-) 285 WP_172793789.1 co-chaperone GroES -
  A2G56_RS06400 - 1432692..1432982 (-) 291 WP_062710568.1 hypothetical protein -
  A2G56_RS10255 - 1433002..1433187 (-) 186 Protein_1270 PTS system mannose/fructose/sorbose family transporter subunit IID -
  A2G56_RS06405 - 1433204..1433995 (-) 792 WP_062710570.1 Cof-type HAD-IIB family hydrolase -
  A2G56_RS06410 - 1434190..1435830 (-) 1641 WP_062710573.1 ABC transporter ATP-binding protein -
  A2G56_RS06415 - 1435831..1436802 (-) 972 WP_062710577.1 ThiF family adenylyltransferase -
  A2G56_RS06420 ssbA 1437104..1437499 (-) 396 WP_018380740.1 single-stranded DNA-binding protein Machinery gene
  A2G56_RS10675 - 1437707..1437937 (+) 231 WP_237334441.1 hypothetical protein -
  A2G56_RS06430 ytpR 1437958..1438584 (-) 627 WP_062710582.1 YtpR family tRNA-binding protein -
  A2G56_RS06435 - 1438590..1438904 (-) 315 WP_062710585.1 thioredoxin family protein -
  A2G56_RS06440 - 1438901..1439182 (-) 282 WP_062710589.1 DUF4651 domain-containing protein -
  A2G56_RS06445 - 1439374..1439574 (+) 201 WP_062710592.1 cold-shock protein -
  A2G56_RS06450 pepA 1439732..1440796 (+) 1065 WP_062710595.1 glutamyl aminopeptidase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14807.80 Da        Isoelectric Point: 5.9497

>NTDB_id=174482 A2G56_RS06420 WP_018380740.1 1437104..1437499(-) (ssbA) [Streptococcus halotolerans strain HTS9]
MYNKTILIGRLVATPEVVKTPNDKSVARVTVAVNRRFKGKDGEREADFINVVFWGRLAETLASYGTKGSLISLDGELRTR
SYEKDGQRHYMTEVLGQSFQLLESRAQRAMRENNVAADLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=174482 A2G56_RS06420 WP_018380740.1 1437104..1437499(-) (ssbA) [Streptococcus halotolerans strain HTS9]
ATGTATAATAAAACTATTTTAATCGGTCGTTTGGTGGCAACACCAGAGGTAGTAAAAACTCCCAATGATAAATCTGTTGC
GCGTGTTACCGTTGCTGTCAATCGTCGCTTTAAAGGTAAGGATGGTGAGCGAGAAGCTGATTTTATCAATGTGGTCTTTT
GGGGGCGTTTGGCAGAAACCTTAGCGTCTTATGGAACGAAGGGTAGCTTGATTTCATTAGATGGTGAGCTGCGTACGCGT
TCTTATGAAAAAGATGGGCAAAGACACTATATGACAGAAGTTTTGGGACAATCTTTCCAATTACTCGAAAGTCGTGCCCA
ACGTGCTATGCGTGAAAATAATGTTGCAGCGGATCTGGCTGACCTTGTTCTTGAGGAAGAGGAGTTGCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

83.206

100

0.832
  ssbB/cilA Streptococcus pneumoniae TIGR4

77.863

100

0.779
  ssbB/cilA Streptococcus pneumoniae Rx1

77.099

100

0.771
  ssbB/cilA Streptococcus pneumoniae D39

77.099

100

0.771
  ssbB/cilA Streptococcus mitis SK321

77.099

100

0.771
  ssbB/cilA Streptococcus pneumoniae R6

77.099

100

0.771
  ssbB Streptococcus sobrinus strain NIDR 6715-7

77.099

100

0.771
  ssbB/cilA Streptococcus mitis NCTC 12261

75.573

100

0.756
  ssbB Lactococcus lactis subsp. cremoris KW2

63.158

87.023

0.55
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.887

80.916

0.42
  ssb Latilactobacillus sakei subsp. sakei 23K

44.068

90.076

0.397

Multiple sequence alignment