Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   WM43_RS14590 Genome accession   NZ_CP014774
Coordinates   3195222..3196463 (-) Length   413 a.a.
NCBI ID   WP_005336136.1    Uniprot ID   A0A0T6QCE0
Organism   Aeromonas veronii strain AVNIH1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3190222..3201463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WM43_RS14565 (WM43_14560) mutT 3192214..3192618 (+) 405 WP_019444787.1 8-oxo-dGTP diphosphatase MutT -
  WM43_RS14570 (WM43_14565) yacG 3192696..3192890 (-) 195 WP_005336142.1 DNA gyrase inhibitor YacG -
  WM43_RS14575 (WM43_14570) zapD 3192900..3193622 (-) 723 WP_005336141.1 cell division protein ZapD -
  WM43_RS14580 (WM43_14575) coaE 3193660..3194274 (-) 615 WP_064339258.1 dephospho-CoA kinase -
  WM43_RS14585 (WM43_14580) pilD 3194288..3195160 (-) 873 WP_064339259.1 prepilin peptidase Machinery gene
  WM43_RS14590 (WM43_14585) pilC 3195222..3196463 (-) 1242 WP_005336136.1 type II secretion system F family protein Machinery gene
  WM43_RS14595 (WM43_14590) pilB 3196704..3198410 (-) 1707 WP_064339260.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  WM43_RS14600 (WM43_14595) - 3198417..3198860 (-) 444 WP_272936814.1 pilin -
  WM43_RS14605 (WM43_14600) - 3198916..3200052 (-) 1137 WP_021141311.1 ISAs1-like element ISAs12 family transposase -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45427.55 Da        Isoelectric Point: 9.7221

>NTDB_id=173803 WM43_RS14590 WP_005336136.1 3195222..3196463(-) (pilC) [Aeromonas veronii strain AVNIH1]
MATLTKKNNAPKKVFAFRWHGVNRKGQKVSGELQADSINTVKTELRKQGVNVTKVAKKSQGLFSKGGAKIKPMDIAIVSR
QITTMLSAGVPLVQSLQIIARSHEKASMRELMGQIAADVETGTPMSEALRRHPLYFDDLYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPVFTQFVIGISRFMQNWWYVFFGGTA
LGIFLYVRAWRASQKVKDNTDKFVLTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVIA
MYLPIFKLGDVVG

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=173803 WM43_RS14590 WP_005336136.1 3195222..3196463(-) (pilC) [Aeromonas veronii strain AVNIH1]
ATGGCAACCCTAACGAAAAAGAACAATGCCCCCAAGAAAGTCTTCGCCTTCCGCTGGCACGGGGTAAACCGCAAGGGGCA
GAAGGTCTCCGGCGAGCTACAGGCCGACAGCATCAACACCGTCAAGACCGAACTGCGCAAGCAGGGGGTCAACGTCACCA
AGGTAGCCAAGAAATCCCAGGGGCTCTTCTCCAAGGGCGGCGCCAAGATCAAGCCGATGGATATCGCCATCGTCTCCCGT
CAGATCACCACCATGCTCTCCGCCGGTGTACCACTGGTGCAGAGCCTGCAGATCATCGCCCGCAGTCACGAGAAAGCCTC
GATGCGCGAGCTGATGGGGCAGATTGCCGCCGATGTTGAGACCGGTACCCCCATGTCGGAGGCACTGCGCCGCCATCCCC
TCTACTTTGACGATCTCTACTGCGATCTGGTGGAAGCCGGTGAGCAATCCGGTGCGCTGGAGACCATCTACGACCGTATC
GCCACTTACCGGGAAAAGTCGGAAGCGCTCAAGTCGAAGATCAAGAAGGCGATGTTCTACCCCACCATGGTCATTCTGGT
CGCCATCGTGGTCACCTCCATCCTGCTGCTGTTCGTCATTCCGCAGTTCGAGGATATCTTCAAGAGCTTCGGCGCCGAGC
TGCCGGTGTTCACCCAGTTTGTCATCGGCATCTCCCGCTTTATGCAGAACTGGTGGTATGTCTTCTTTGGTGGCACTGCC
CTTGGCATCTTCCTCTATGTGCGGGCCTGGCGGGCCTCCCAGAAGGTAAAAGACAATACCGACAAATTTGTCCTCACCAT
TCCGGTGGTCGGGATGATCCTGCACAAGGCGGCGATGGCTCGCTTTGCCCGCACCCTGTCGACCACCTTCTCCGCCGGTA
TCCCGCTGGTAGATGCGCTGATTTCGGCGGCTGGGGCCTCGGGCAACTATGTCTATCGCACCGCCGTCATGGCGATCCGC
AACGAGGTAGTGGCCGGTATGCAGATCAACGTGGCAATGCGCACCGTCGATCTCTTCCCCGACATGGTGATCCAGATGGT
GATGATCGGTGAGGAGTCCGGTGCCATCGATGATATGCTCTCCAAGGTCGCCACCATCTTCGAACAGGAGGTGGATGATC
TGGTCGATGGCCTCACCAGCCTGCTGGAACCCCTCATCATGGTGGTGCTCGGGGTGCTGGTCGGCGGCATGGTTATCGCC
ATGTACCTGCCCATCTTCAAGCTGGGCGACGTGGTAGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T6QCE0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.323

95.884

0.55
  pilC Acinetobacter baumannii D1279779

53.75

96.852

0.521
  pilC Acinetobacter baylyi ADP1

52.393

96.126

0.504
  pilC Legionella pneumophila strain ERS1305867

50.985

98.305

0.501
  pilC Vibrio cholerae strain A1552

46.883

97.094

0.455
  pilC Vibrio campbellii strain DS40M4

45.792

97.821

0.448
  pilG Neisseria gonorrhoeae MS11

40.247

98.063

0.395
  pilG Neisseria meningitidis 44/76-A

40

98.063

0.392
  pilC Thermus thermophilus HB27

38

96.852

0.368

Multiple sequence alignment