Detailed information NTG0173802

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: WM43_RS14585
• Genome accession: NZ_CP014774
• Coordinates: 3194288..3195160 (-)
• Length: 290 a.a.
• NCBI ID: WP_064339259.1
• Uniprot ID: A0AAC9B9I3
• Organism: Aeromonas veronii strain AVNIH1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3189288..3200160

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
WM43_RS14560 (WM43_14555)	secA	3189419..3192139 (+)	2721	WP_064339257.1	preprotein translocase subunit SecA	-
WM43_RS14565 (WM43_14560)	mutT	3192214..3192618 (+)	405	WP_019444787.1	8-oxo-dGTP diphosphatase MutT	-
WM43_RS14570 (WM43_14565)	yacG	3192696..3192890 (-)	195	WP_005336142.1	DNA gyrase inhibitor YacG	-
WM43_RS14575 (WM43_14570)	zapD	3192900..3193622 (-)	723	WP_005336141.1	cell division protein ZapD	-
WM43_RS14580 (WM43_14575)	coaE	3193660..3194274 (-)	615	WP_064339258.1	dephospho-CoA kinase	-
WM43_RS14585 (WM43_14580)	pilD	3194288..3195160 (-)	873	WP_064339259.1	prepilin peptidase	Machinery gene
WM43_RS14590 (WM43_14585)	pilC	3195222..3196463 (-)	1242	WP_005336136.1	type II secretion system F family protein	Machinery gene
WM43_RS14595 (WM43_14590)	pilB	3196704..3198410 (-)	1707	WP_064339260.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
WM43_RS14600 (WM43_14595)	-	3198417..3198860 (-)	444	WP_272936814.1	pilin	-
WM43_RS14605 (WM43_14600)	-	3198916..3200052 (-)	1137	WP_021141311.1	ISAs1-like element ISAs12 family transposase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32066.31 Da
• Isoelectric Point: 6.4813

>NTDB_id=173802 WM43_RS14585 WP_064339259.1 3194288..3195160(-) (pilD) [Aeromonas veronii strain AVNIH1]
MTLLLELAHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYHGYFSPDEEATAPERYNLMVPRSACPNCGHA
ITALENIPLLSWLWLKGRCRDCQAPIPARYPLVELLTALLSVAVAMVITPGWGTLAALLLTWALVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIILLLSSL
VGAVIGISLIALQKHHQGKPIPFGPYLAIAGWIALLWGDTITRWYLSTLL

Nucleotide

• Length: 873 bp

>NTDB_id=173802 WM43_RS14585 WP_064339259.1 3194288..3195160(-) (pilD) [Aeromonas veronii strain AVNIH1]
ATGACACTTCTTCTCGAGCTGGCTCACAGCTTGCCCTGGCTCTACTTCTCGCTGGTTTTTCTTTTCTCCCTGATGATCGG
CAGCTTCCTGAACGTGGTCATCCACCGCTTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAGTATCACGGCTACTTTT
CCCCCGATGAGGAAGCCACTGCGCCAGAACGCTACAACCTGATGGTCCCCCGCTCCGCATGCCCTAACTGTGGCCACGCC
ATCACTGCGCTGGAGAACATCCCGCTGCTGAGCTGGCTCTGGCTCAAAGGGCGTTGCCGCGACTGTCAGGCCCCCATACC
GGCCCGCTATCCGCTGGTAGAGCTGCTGACCGCCCTGCTCTCGGTAGCCGTTGCCATGGTCATAACGCCGGGCTGGGGGA
CGCTGGCCGCCCTGTTGCTAACCTGGGCACTGGTCGCCCTCACCTTCATCGATCTCGACAAGATGTTGCTGCCCGACCAG
CTCACCCTGCCACTGCTATGGGGCGGGCTGCTGTTCAACCTGGCAGGCGGCTTCGTGCCGCTGGCGGATGCAGTGATCGG
CGCCATGGCGGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTCACTGGCAAGGAGGGGATGGGCTATG
GTGACTTCAAGCTGCTGGCGGCCCTGGGCGCCTGGCTCGGTTGGCAGGCGCTGCCCATTATTCTGCTGCTCTCATCTCTG
GTCGGTGCCGTGATCGGCATCAGCCTGATCGCCTTGCAAAAACATCATCAGGGCAAGCCCATCCCCTTCGGCCCCTACCT
CGCCATCGCGGGCTGGATTGCACTGCTATGGGGCGATACCATCACCCGCTGGTATCTCTCTACCCTGCTTTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	59.79	98.621	0.59
pilD	Vibrio campbellii strain DS40M4	56.098	98.966	0.555
pilD	Acinetobacter baumannii D1279779	52.878	95.862	0.507
pilD	Acinetobacter nosocomialis M2	52.878	95.862	0.507
pilD	Neisseria gonorrhoeae MS11	49.248	91.724	0.452