Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   A0O21_RS10425 Genome accession   NZ_CP014699
Coordinates   2220185..2220580 (+) Length   131 a.a.
NCBI ID   WP_067064935.1    Uniprot ID   A0A172QA17
Organism   Streptococcus pantholopis strain TA 26     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2215185..2225580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A0O21_RS10400 (A0O21_10400) - 2215737..2216027 (+) 291 WP_067065307.1 DUF4651 domain-containing protein -
  A0O21_RS10405 (A0O21_10405) ytpR 2216079..2216705 (+) 627 WP_067064926.1 YtpR family tRNA-binding protein -
  A0O21_RS10410 (A0O21_10410) - 2216887..2217828 (+) 942 WP_067064928.1 sugar phosphate isomerase/epimerase family protein -
  A0O21_RS10415 (A0O21_10415) - 2217847..2219217 (+) 1371 WP_067064930.1 PTS transporter subunit EIIC -
  A0O21_RS10420 (A0O21_10420) - 2219275..2220012 (+) 738 WP_067064933.1 DeoR/GlpR family DNA-binding transcription regulator -
  A0O21_RS10425 (A0O21_10425) ssbB 2220185..2220580 (+) 396 WP_067064935.1 single-stranded DNA-binding protein Machinery gene
  A0O21_RS10430 (A0O21_10430) - 2221394..2222365 (+) 972 WP_067064938.1 substrate-binding domain-containing protein -
  A0O21_RS10435 (A0O21_10435) - 2222365..2223684 (+) 1320 WP_067064940.1 sensor histidine kinase -
  A0O21_RS10440 (A0O21_10440) - 2223677..2224354 (+) 678 WP_067064942.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14814.82 Da        Isoelectric Point: 8.0173

>NTDB_id=173388 A0O21_RS10425 WP_067064935.1 2220185..2220580(+) (ssbB) [Streptococcus pantholopis strain TA 26]
MYNKVIIIGRLTAAPELVKTATNKSVTHVTLAVNRRFKKQNGEREADFISTVVWGRLAETLVSYAGKGSLISLDGELRTR
KYEKDDRTNYVTEVLCHSFQLLESRAQRAVRENNSANDLTDLVLAEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=173388 A0O21_RS10425 WP_067064935.1 2220185..2220580(+) (ssbB) [Streptococcus pantholopis strain TA 26]
ATGTATAATAAAGTCATTATCATCGGCCGTCTGACAGCAGCCCCTGAGCTGGTTAAGACAGCTACCAACAAATCTGTCAC
ACATGTGACTCTGGCCGTGAACCGTCGTTTCAAGAAGCAAAATGGTGAACGAGAGGCTGATTTTATCAGTACTGTTGTTT
GGGGCCGGCTGGCCGAAACTTTGGTTTCTTATGCTGGTAAAGGCAGTCTTATATCGCTGGATGGCGAACTGAGAACACGC
AAATACGAAAAAGATGACCGTACCAACTATGTAACTGAGGTGCTCTGTCACTCATTTCAGCTTTTAGAAAGCCGAGCACA
GCGGGCGGTAAGGGAGAACAACAGTGCAAATGACTTGACAGACTTGGTTTTAGCAGAGGAGGAGCTCCCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A172QA17

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Streptococcus sobrinus strain NIDR 6715-7

79.389

100

0.794
  ssbA Streptococcus mutans UA159

77.863

100

0.779
  ssbB/cilA Streptococcus pneumoniae D39

73.282

100

0.733
  ssbB/cilA Streptococcus pneumoniae R6

73.282

100

0.733
  ssbB/cilA Streptococcus pneumoniae TIGR4

73.282

100

0.733
  ssbB/cilA Streptococcus pneumoniae Rx1

73.282

100

0.733
  ssbB/cilA Streptococcus mitis SK321

72.519

100

0.725
  ssbB/cilA Streptococcus mitis NCTC 12261

71.756

100

0.718
  ssbB Lactococcus lactis subsp. cremoris KW2

63.393

85.496

0.542
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.057

80.916

0.397
  ssb Latilactobacillus sakei subsp. sakei 23K

43.59

89.313

0.389

Multiple sequence alignment