Detailed information NTG0172609

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: AZF37_RS08565
• Genome accession: NZ_CP014606
• Coordinates: 1373750..1374163 (-)
• Length: 137 a.a.
• NCBI ID: WP_088370416.1
• Uniprot ID: A0A191HWM4
• Organism: Endosymbiont 'TC1' of Trimyema compressum strain not applicalbe isolate TC1
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1368750..1379163

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AZF37_RS08545 (AZF37_08365)	-	1370072..1371352 (-)	1281	WP_162474029.1	hypothetical protein	-
AZF37_RS08550 (AZF37_08370)	-	1371454..1372341 (+)	888	WP_088370413.1	YegS/Rv2252/BmrU family lipid kinase	-
AZF37_RS11905 (AZF37_08375)	-	1372344..1372712 (-)	369	WP_342668720.1	ECF transporter S component	-
AZF37_RS11910 (AZF37_08380)	-	1372640..1372846 (-)	207	WP_245611949.1	ECF transporter S component	-
AZF37_RS08560 (AZF37_08385)	-	1373116..1373667 (-)	552	WP_088370415.1	NAD(P)H-dependent oxidoreductase	-
AZF37_RS08565 (AZF37_08390)	ssbA	1373750..1374163 (-)	414	WP_088370416.1	single-stranded DNA-binding protein	Machinery gene
AZF37_RS08570 (AZF37_08395)	-	1374168..1374350 (-)	183	WP_088370417.1	DUF951 domain-containing protein	-
AZF37_RS10720	-	1374783..1375004 (-)	222	WP_162474030.1	hypothetical protein	-
AZF37_RS10725	-	1375086..1375256 (-)	171	WP_162474031.1	hypothetical protein	-
AZF37_RS10730	-	1375296..1375433 (-)	138	WP_162474032.1	hypothetical protein	-
AZF37_RS08575 (AZF37_08400)	-	1375656..1376231 (-)	576	WP_162474033.1	hypothetical protein	-
AZF37_RS10735	-	1376471..1376830 (-)	360	WP_162474034.1	hypothetical protein	-
AZF37_RS10740	-	1376802..1377221 (-)	420	WP_162474088.1	ATPase, T2SS/T4P/T4SS family	-
AZF37_RS10745	-	1377208..1377663 (-)	456	WP_162474035.1	Flp pilus assembly complex ATPase component TadA	-
AZF37_RS08585 (AZF37_08410)	-	1377633..1377857 (-)	225	WP_088370419.1	hypothetical protein	-
AZF37_RS08590 (AZF37_08415)	-	1378344..1378529 (-)	186	WP_088370420.1	hypothetical protein	-

Sequence

Protein

• Length: 137 a.a.
• Molecular weight: 15024.79 Da
• Isoelectric Point: 4.7420

>NTDB_id=172609 AZF37_RS08565 WP_088370416.1 1373750..1374163(-) (ssbA) [Endosymbiont 'TC1' of Trimyema compressum strain not applicalbe isolate TC1]
MLNKVILIGRLVRDPELRYTPNGKAVANFTLAVDRGFKDKETGESQADFIRIVTWDKQAELCANNLAKGRLVAVEGSIRT
GSYEKDGQKVYTTDIQATRVVFLDWGDKGVGGGGNNNASTTSDPFTPQNLEDDDIPF

Nucleotide

• Length: 414 bp

>NTDB_id=172609 AZF37_RS08565 WP_088370416.1 1373750..1374163(-) (ssbA) [Endosymbiont 'TC1' of Trimyema compressum strain not applicalbe isolate TC1]
ATGCTTAATAAAGTTATTTTAATCGGTCGTTTAGTCAGAGATCCAGAATTGCGTTATACACCAAATGGTAAAGCGGTTGC
AAACTTTACATTGGCTGTTGACAGAGGGTTTAAAGATAAAGAAACAGGTGAAAGCCAAGCAGACTTTATCAGAATTGTCA
CTTGGGATAAACAAGCAGAGTTATGTGCAAATAATTTGGCTAAAGGCAGATTAGTTGCAGTAGAAGGCAGTATCCGTACT
GGCAGTTATGAAAAAGATGGACAAAAAGTATATACTACAGATATTCAAGCAACTCGAGTTGTATTCTTAGACTGGGGAGA
TAAAGGCGTAGGTGGTGGAGGAAACAATAATGCTTCAACAACTAGTGATCCATTTACACCTCAGAACCTAGAAGATGACG
ATATTCCGTTTTAG

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

3D structure

• AlphaFold DB: A0A191HWM4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	43.353	100	0.547
ssb	Latilactobacillus sakei subsp. sakei 23K	36.628	100	0.46
ssbB	Streptococcus sobrinus strain NIDR 6715-7	45.255	100	0.453
ssbB/cilA	Streptococcus mitis NCTC 12261	40.876	100	0.409
ssbB/cilA	Streptococcus pneumoniae TIGR4	40.876	100	0.409
ssbB/cilA	Streptococcus mitis SK321	40.146	100	0.401
ssbA	Streptococcus mutans UA159	40.146	100	0.401
ssbB/cilA	Streptococcus pneumoniae D39	40.146	100	0.401
ssbB/cilA	Streptococcus pneumoniae Rx1	40.146	100	0.401
ssbB/cilA	Streptococcus pneumoniae R6	40.146	100	0.401
ssbB	Bacillus subtilis subsp. subtilis str. 168	49.524	76.642	0.38