Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AYJ52_RS06860 Genome accession   NZ_CP014477
Coordinates   1455023..1456249 (-) Length   408 a.a.
NCBI ID   WP_017402591.1    Uniprot ID   -
Organism   Acinetobacter pittii strain AP_882     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1450023..1461249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYJ52_RS06830 (AYJ52_06830) - 1450053..1451363 (+) 1311 WP_017402595.1 tetratricopeptide repeat protein -
  AYJ52_RS06835 (AYJ52_06835) - 1451440..1451766 (+) 327 WP_002115102.1 pyrimidine/purine nucleoside phosphorylase -
  AYJ52_RS06840 (AYJ52_06840) rlmB 1451869..1452618 (+) 750 WP_016142380.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  AYJ52_RS06845 (AYJ52_06845) - 1452654..1453568 (+) 915 WP_017402594.1 DMT family transporter -
  AYJ52_RS06850 (AYJ52_06850) coaE 1453565..1454161 (-) 597 WP_017402593.1 dephospho-CoA kinase -
  AYJ52_RS06855 (AYJ52_06855) pilD 1454163..1455023 (-) 861 WP_017402592.1 prepilin peptidase Machinery gene
  AYJ52_RS06860 (AYJ52_06860) pilC 1455023..1456249 (-) 1227 WP_017402591.1 type II secretion system F family protein Machinery gene
  AYJ52_RS06865 (AYJ52_06865) pilB 1456277..1457989 (-) 1713 WP_017402590.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AYJ52_RS06870 (AYJ52_06870) tpiA 1458281..1459075 (+) 795 WP_017402589.1 triose-phosphate isomerase -
  AYJ52_RS06875 (AYJ52_06875) secG 1459088..1459417 (+) 330 WP_017398731.1 preprotein translocase subunit SecG -
  AYJ52_RS06895 (AYJ52_06895) rimP 1460055..1460579 (+) 525 WP_002114922.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45055.50 Da        Isoelectric Point: 9.8207

>NTDB_id=171845 AYJ52_RS06860 WP_017402591.1 1455023..1456249(-) (pilC) [Acinetobacter pittii strain AP_882]
MTVKKAQMMPTFAYEGVDRKGIKIKGELPAKNMALAKVTLRKQGVTVRNIREKRKNILEGLFKKKVSTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVVVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSKWMQEYWFIMIIVIGAVIA
AFLEAKKRSKKFRDGLDKLTLKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEEAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLIGGLVIAMYLP
IFQMGSVI

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=171845 AYJ52_RS06860 WP_017402591.1 1455023..1456249(-) (pilC) [Acinetobacter pittii strain AP_882]
ATGACTGTGAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCATAAAAATTAAGGGAGA
ACTTCCGGCTAAGAATATGGCCTTAGCCAAAGTCACCCTACGCAAACAAGGGGTAACTGTCCGTAATATTCGAGAAAAGC
GTAAAAATATTCTTGAAGGTTTATTCAAGAAGAAAGTATCCACACTCGATATCACGATTTTCACCCGTCAACTTGCAACG
ATGATGAAAGCAGGGGTTCCACTGGTACAAGGCTTTGAAATTGTAGCGGAAGGTTTAGAAAACCCTGCTATGCGCGAGGT
AGTACTCGGTATTAAAGGCGAAGTTGAAGGTGGTAGTACCTTTGCTTCAGCTTTAAGAAAGTATCCTCAACACTTCGATA
ACTTGTTTTGTTCTCTTGTAGAGTCTGGTGAACAATCTGGTGCACTTGAAACCATGTTGGACCGTGTAGCAATTTACAAA
GAAAAAAGTGAATTGCTTAAACAGAAAATTAAGAAGGCTATGAAATATCCAGCAACGGTTATTGTAGTTGCTGTGGTTGT
TACCATTATTTTGATGGTTAAAGTAGTGCCTGTTTTCCAAGACCTGTTTTCTTCTTTTGGTGCAGATTTACCTGCATTCA
CCCAAATGGTCGTGAATATGTCGAAATGGATGCAGGAATACTGGTTCATTATGATTATTGTGATTGGAGCAGTGATTGCT
GCCTTTCTGGAAGCCAAGAAGCGCAGCAAAAAATTTCGTGATGGTTTAGATAAACTCACCCTGAAACTACCTATCTTTGG
TGATCTGGTTTATAAGGCGATTATTGCCCGTTATAGCCGTACTTTAGCCACCACGTTTGCCGCTGGTGTTCCGCTCATTG
ATGCGCTTGAGTCAACGGCTGGTGCAACCAACAATGTCATTTATGAAGAAGCCGTCATGAAAATTCGTGAAGATGTAGCT
ACAGGCCAACAACTTCAATTTGCAATGCGTGTTTCAAATCGTTTTCCATCTATGGCTATACAAATGGTCGCAATTGGTGA
AGAATCTGGTGCACTAGACAGCATGCTCGATAAAGTTGCCACTTATTATGAAAATGAAGTTGATAATGCCGTTGATGGTT
TAACTTCAATGATGGAACCTTTAATCATGGCAATTTTAGGGGTGCTCATAGGCGGTCTAGTAATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTCATATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

97.304

100

0.973
  pilC Acinetobacter baylyi ADP1

85.539

100

0.855
  pilC Pseudomonas stutzeri DSM 10701

59.259

99.265

0.588
  pilC Legionella pneumophila strain ERS1305867

52.593

99.265

0.522
  pilG Neisseria meningitidis 44/76-A

46.482

97.549

0.453
  pilG Neisseria gonorrhoeae MS11

46.482

97.549

0.453
  pilC Vibrio cholerae strain A1552

42.157

100

0.422
  pilC Vibrio campbellii strain DS40M4

40.098

100

0.402
  pilC Thermus thermophilus HB27

36.908

98.284

0.363

Multiple sequence alignment