Detailed information NTG0171844

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AYJ52_RS06855
• Genome accession: NZ_CP014477
• Coordinates: 1454163..1455023 (-)
• Length: 286 a.a.
• NCBI ID: WP_017402592.1
• Uniprot ID: -
• Organism: Acinetobacter pittii strain AP_882
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1449163..1460023

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AYJ52_RS06830 (AYJ52_06830)	-	1450053..1451363 (+)	1311	WP_017402595.1	tetratricopeptide repeat protein	-
AYJ52_RS06835 (AYJ52_06835)	-	1451440..1451766 (+)	327	WP_002115102.1	pyrimidine/purine nucleoside phosphorylase	-
AYJ52_RS06840 (AYJ52_06840)	rlmB	1451869..1452618 (+)	750	WP_016142380.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
AYJ52_RS06845 (AYJ52_06845)	-	1452654..1453568 (+)	915	WP_017402594.1	DMT family transporter	-
AYJ52_RS06850 (AYJ52_06850)	coaE	1453565..1454161 (-)	597	WP_017402593.1	dephospho-CoA kinase	-
AYJ52_RS06855 (AYJ52_06855)	pilD	1454163..1455023 (-)	861	WP_017402592.1	prepilin peptidase	Machinery gene
AYJ52_RS06860 (AYJ52_06860)	pilC	1455023..1456249 (-)	1227	WP_017402591.1	type II secretion system F family protein	Machinery gene
AYJ52_RS06865 (AYJ52_06865)	pilB	1456277..1457989 (-)	1713	WP_017402590.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AYJ52_RS06870 (AYJ52_06870)	tpiA	1458281..1459075 (+)	795	WP_017402589.1	triose-phosphate isomerase	-
AYJ52_RS06875 (AYJ52_06875)	secG	1459088..1459417 (+)	330	WP_017398731.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32120.72 Da
• Isoelectric Point: 7.0886

>NTDB_id=171844 AYJ52_RS06855 WP_017402592.1 1454163..1455023(-) (pilD) [Acinetobacter pittii strain AP_882]
MQEIIAYFIQNLTALYIAVALLSLCIGSFLNVVIYRIPKMMEQDWQQECQMLLNPELPIIEHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTLQMLWGLVLTWILIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGCLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=171844 AYJ52_RS06855 WP_017402592.1 1454163..1455023(-) (pilD) [Acinetobacter pittii strain AP_882]
ATGCAAGAAATTATTGCTTATTTTATTCAAAACTTAACTGCACTTTATATTGCAGTCGCACTATTGAGCCTATGTATTGG
TAGCTTTTTGAATGTGGTAATTTATCGCATCCCCAAAATGATGGAACAAGATTGGCAGCAGGAATGTCAAATGTTGCTTA
ATCCCGAACTACCCATCATTGAGCATGAAAAGCTGACATTAAGTAAACCTGCTTCATCATGTCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCAGTTATAAGCTGGTTAATGTTAAGAGGAAAATGTGGCCATTGCCAACATCCTATTAG
CATTCGTTATCCAGCGATTGAATTACTCACGATGCTATGTTCATTAGTAGTCGTCATGGTTTTTGGTCCAACCCTACAAA
TGCTTTGGGGGCTAGTGCTCACTTGGATTTTGATTGCTTTAACATTTATAGACTTTGATACTCAGCTACTACCTGACCGT
TTCACCCTACCTTTGGCTGCTCTCGGCTTAGGTATTAATACCTTTAATATTTACACCTCGCCTAACTCAGCCATTTGGGG
ATGTTTAATCGGCTTTTTATGTCTTTGGATTGTGTATTACTTATTTAAAGTGATTACAGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCCGCATTAGGCGCGTGGATGGGGCCATTGATGCTGCCATTAATTGTGCTATTGTCATCTTTA
CTCGGTGCAATTATTGGCATCATTTTACTAAAATTGCGTAATGATAATCAGCCCTTTGCGTTTGGGCCCTATATTGCCAT
TGCGGGTTGGGTTGCCTTTTTATGGGGTGACCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	95.804	100	0.958
pilD	Acinetobacter nosocomialis M2	95.455	100	0.955
pilD	Vibrio cholerae strain A1552	53.676	95.105	0.51
pilD	Vibrio campbellii strain DS40M4	53.309	95.105	0.507
pilD	Neisseria gonorrhoeae MS11	47.71	91.608	0.437