Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | AYM39_RS00785 | Genome accession | NZ_CP014360 |
| Coordinates | 178552..179769 (-) | Length | 405 a.a. |
| NCBI ID | WP_064020098.1 | Uniprot ID | A0A172U3E0 |
| Organism | Methylomonas sp. DH-1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 173552..184769
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AYM39_RS00755 (AYM39_00750) | - | 174240..175178 (+) | 939 | WP_064020092.1 | Nudix family hydrolase | - |
| AYM39_RS00760 (AYM39_00755) | - | 175217..176002 (-) | 786 | WP_064020093.1 | class I SAM-dependent methyltransferase | - |
| AYM39_RS00765 (AYM39_00760) | - | 176025..176240 (-) | 216 | WP_064020094.1 | DNA gyrase inhibitor YacG | - |
| AYM39_RS00770 (AYM39_00765) | zapD | 176240..177013 (-) | 774 | WP_064020095.1 | cell division protein ZapD | - |
| AYM39_RS00775 (AYM39_00770) | coaE | 177010..177621 (-) | 612 | WP_064020096.1 | dephospho-CoA kinase | - |
| AYM39_RS00780 (AYM39_00775) | pilD | 177625..178491 (-) | 867 | WP_064020097.1 | A24 family peptidase | Machinery gene |
| AYM39_RS00785 (AYM39_00780) | pilC | 178552..179769 (-) | 1218 | WP_064020098.1 | type II secretion system F family protein | Machinery gene |
| AYM39_RS00790 (AYM39_00785) | pilB | 179772..181487 (-) | 1716 | WP_064020099.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| AYM39_RS00795 (AYM39_00790) | thiC | 181650..183518 (-) | 1869 | WP_064020100.1 | phosphomethylpyrimidine synthase ThiC | - |
Sequence
Protein
Download Length: 405 a.a. Molecular weight: 44415.43 Da Isoelectric Point: 7.2458
>NTDB_id=170650 AYM39_RS00785 WP_064020098.1 178552..179769(-) (pilC) [Methylomonas sp. DH-1]
MAKQEEQIEFNWDGFDKQNKKTRGTISAKSEVIARAELRRMGIRVVGIKPKAKPLFSPRVQKITPGDIAVFARQLATMLA
AGVPLVQSFDIIGRGHDNASMSEMLLSIKADVEGGDTLAQALGRKPLYFDALFCNLVEAGEHAGVLETLLDKIATYKEKT
ESIKKKVKKALTYPVAVLVVAFIVTAILLVFVVPVFEDLFKGFGADLPAFTQFVIELSAWVQEWWWAVVGVLFIGGYTFT
YFKKRSKAFNHFLDRMLLKIPVVGMILQKSAIARFARTLSTMSAAGVPLVEALVSVAGACGNILFYEAVMKVRDDVATGQ
QLKFALETTGMFPNMVVQMVAIGEESGSIDAMLDKVADFYEEEVDNLVDNLSSLMEPIIMVILGILVGGLIVAMYLPIFK
LGAAI
MAKQEEQIEFNWDGFDKQNKKTRGTISAKSEVIARAELRRMGIRVVGIKPKAKPLFSPRVQKITPGDIAVFARQLATMLA
AGVPLVQSFDIIGRGHDNASMSEMLLSIKADVEGGDTLAQALGRKPLYFDALFCNLVEAGEHAGVLETLLDKIATYKEKT
ESIKKKVKKALTYPVAVLVVAFIVTAILLVFVVPVFEDLFKGFGADLPAFTQFVIELSAWVQEWWWAVVGVLFIGGYTFT
YFKKRSKAFNHFLDRMLLKIPVVGMILQKSAIARFARTLSTMSAAGVPLVEALVSVAGACGNILFYEAVMKVRDDVATGQ
QLKFALETTGMFPNMVVQMVAIGEESGSIDAMLDKVADFYEEEVDNLVDNLSSLMEPIIMVILGILVGGLIVAMYLPIFK
LGAAI
Nucleotide
Download Length: 1218 bp
>NTDB_id=170650 AYM39_RS00785 WP_064020098.1 178552..179769(-) (pilC) [Methylomonas sp. DH-1]
ATGGCAAAACAAGAAGAGCAGATCGAATTCAACTGGGACGGCTTCGACAAACAGAACAAGAAAACCAGGGGCACCATCAG
CGCCAAGAGCGAGGTAATCGCCCGCGCCGAATTGCGGCGGATGGGCATCAGGGTGGTCGGCATCAAACCCAAGGCGAAAC
CCTTGTTCAGTCCGCGGGTACAAAAAATCACGCCGGGCGATATCGCGGTATTCGCCCGCCAATTGGCGACGATGCTGGCG
GCGGGGGTGCCGTTGGTGCAGTCGTTCGATATCATCGGCAGGGGCCACGACAACGCCAGTATGTCGGAAATGCTGCTGTC
GATCAAAGCCGACGTCGAGGGCGGCGACACGCTGGCACAGGCGCTGGGCCGCAAGCCTTTGTATTTCGATGCTCTGTTCT
GCAATCTGGTCGAAGCCGGCGAGCATGCCGGGGTACTGGAAACCCTGTTGGACAAAATCGCCACCTACAAGGAAAAAACC
GAATCGATCAAGAAAAAAGTCAAAAAAGCCCTGACCTATCCGGTTGCGGTTCTGGTGGTGGCGTTTATCGTCACGGCGAT
TTTGTTGGTATTCGTGGTGCCGGTGTTCGAGGATTTGTTTAAAGGCTTCGGCGCCGATTTGCCGGCTTTCACCCAATTCG
TCATCGAATTGTCGGCCTGGGTACAGGAGTGGTGGTGGGCCGTGGTCGGCGTGCTGTTTATCGGCGGTTACACGTTTACC
TACTTTAAGAAGCGTTCCAAGGCCTTCAACCATTTTCTGGACCGGATGCTGCTAAAAATCCCGGTGGTCGGCATGATCCT
GCAAAAATCGGCGATTGCCCGCTTCGCCCGCACGCTGTCGACGATGTCGGCCGCCGGCGTGCCGTTGGTCGAAGCCTTGG
TCTCGGTCGCCGGCGCCTGCGGCAACATCCTGTTCTACGAAGCCGTGATGAAGGTGCGCGACGACGTCGCCACCGGCCAG
CAATTGAAATTCGCCTTGGAAACCACCGGCATGTTTCCGAATATGGTGGTGCAAATGGTGGCTATCGGCGAGGAGTCCGG
TTCGATCGACGCGATGCTGGACAAGGTCGCCGACTTTTACGAAGAAGAGGTCGACAACCTGGTCGATAACCTGAGCAGCT
TGATGGAACCTATCATCATGGTGATCTTGGGTATTCTGGTCGGCGGCTTGATCGTGGCGATGTATTTGCCGATCTTCAAA
TTGGGCGCCGCTATCTAA
ATGGCAAAACAAGAAGAGCAGATCGAATTCAACTGGGACGGCTTCGACAAACAGAACAAGAAAACCAGGGGCACCATCAG
CGCCAAGAGCGAGGTAATCGCCCGCGCCGAATTGCGGCGGATGGGCATCAGGGTGGTCGGCATCAAACCCAAGGCGAAAC
CCTTGTTCAGTCCGCGGGTACAAAAAATCACGCCGGGCGATATCGCGGTATTCGCCCGCCAATTGGCGACGATGCTGGCG
GCGGGGGTGCCGTTGGTGCAGTCGTTCGATATCATCGGCAGGGGCCACGACAACGCCAGTATGTCGGAAATGCTGCTGTC
GATCAAAGCCGACGTCGAGGGCGGCGACACGCTGGCACAGGCGCTGGGCCGCAAGCCTTTGTATTTCGATGCTCTGTTCT
GCAATCTGGTCGAAGCCGGCGAGCATGCCGGGGTACTGGAAACCCTGTTGGACAAAATCGCCACCTACAAGGAAAAAACC
GAATCGATCAAGAAAAAAGTCAAAAAAGCCCTGACCTATCCGGTTGCGGTTCTGGTGGTGGCGTTTATCGTCACGGCGAT
TTTGTTGGTATTCGTGGTGCCGGTGTTCGAGGATTTGTTTAAAGGCTTCGGCGCCGATTTGCCGGCTTTCACCCAATTCG
TCATCGAATTGTCGGCCTGGGTACAGGAGTGGTGGTGGGCCGTGGTCGGCGTGCTGTTTATCGGCGGTTACACGTTTACC
TACTTTAAGAAGCGTTCCAAGGCCTTCAACCATTTTCTGGACCGGATGCTGCTAAAAATCCCGGTGGTCGGCATGATCCT
GCAAAAATCGGCGATTGCCCGCTTCGCCCGCACGCTGTCGACGATGTCGGCCGCCGGCGTGCCGTTGGTCGAAGCCTTGG
TCTCGGTCGCCGGCGCCTGCGGCAACATCCTGTTCTACGAAGCCGTGATGAAGGTGCGCGACGACGTCGCCACCGGCCAG
CAATTGAAATTCGCCTTGGAAACCACCGGCATGTTTCCGAATATGGTGGTGCAAATGGTGGCTATCGGCGAGGAGTCCGG
TTCGATCGACGCGATGCTGGACAAGGTCGCCGACTTTTACGAAGAAGAGGTCGACAACCTGGTCGATAACCTGAGCAGCT
TGATGGAACCTATCATCATGGTGATCTTGGGTATTCTGGTCGGCGGCTTGATCGTGGCGATGTATTTGCCGATCTTCAAA
TTGGGCGCCGCTATCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Legionella pneumophila strain ERS1305867 |
59.75 |
98.765 |
0.59 |
| pilC | Pseudomonas stutzeri DSM 10701 |
56.313 |
97.778 |
0.551 |
| pilC | Acinetobacter baumannii D1279779 |
53.652 |
98.025 |
0.526 |
| pilC | Acinetobacter baylyi ADP1 |
51.961 |
100 |
0.523 |
| pilG | Neisseria meningitidis 44/76-A |
47.059 |
100 |
0.474 |
| pilG | Neisseria gonorrhoeae MS11 |
47.059 |
100 |
0.474 |
| pilC | Vibrio cholerae strain A1552 |
43.038 |
97.531 |
0.42 |
| pilC | Vibrio campbellii strain DS40M4 |
41.117 |
97.284 |
0.4 |
| pilC | Thermus thermophilus HB27 |
36.591 |
98.519 |
0.36 |