Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   AXE83_RS02605 Genome accession   NZ_CP014264
Coordinates   542113..542508 (+) Length   131 a.a.
NCBI ID   WP_060955314.1    Uniprot ID   A0A0X8JXB4
Organism   Streptococcus sp. oral taxon 431 strain F0610 (5-114)     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 537113..547508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AXE83_RS02565 (AXE83_02565) - 537589..537771 (+) 183 WP_060955308.1 hypothetical protein -
  AXE83_RS02570 (AXE83_02570) - 538093..538326 (+) 234 WP_000368732.1 DUF1858 domain-containing protein -
  AXE83_RS02575 (AXE83_02575) - 538326..539660 (+) 1335 WP_060955309.1 DUF438 domain-containing protein -
  AXE83_RS02580 (AXE83_02580) - 539670..539924 (+) 255 WP_060955310.1 DUF1912 family protein -
  AXE83_RS02585 (AXE83_02585) - 540001..540291 (+) 291 WP_000850671.1 DUF4651 domain-containing protein -
  AXE83_RS02590 (AXE83_02590) - 540288..540605 (+) 318 WP_060955311.1 thioredoxin family protein -
  AXE83_RS02595 (AXE83_02595) - 540619..541245 (+) 627 WP_060955312.1 DUF4479 and tRNA-binding domain-containing protein -
  AXE83_RS02600 (AXE83_02600) - 541275..542036 (+) 762 WP_060955313.1 SDR family NAD(P)-dependent oxidoreductase -
  AXE83_RS02605 (AXE83_02605) ssbB/cilA 542113..542508 (+) 396 WP_060955314.1 single-stranded DNA-binding protein Machinery gene
  AXE83_RS02610 (AXE83_02610) groES 542664..542948 (+) 285 WP_060955315.1 co-chaperone GroES -
  AXE83_RS02615 (AXE83_02615) groL 542964..544583 (+) 1620 WP_060955316.1 chaperonin GroEL -
  AXE83_RS02620 (AXE83_02620) serS 544788..546062 (-) 1275 WP_060955317.1 serine--tRNA ligase -
  AXE83_RS02625 (AXE83_02625) - 546276..546647 (-) 372 WP_060955318.1 DUF956 family protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14771.71 Da        Isoelectric Point: 5.9409

>NTDB_id=169986 AXE83_RS02605 WP_060955314.1 542113..542508(+) (ssbB/cilA) [Streptococcus sp. oral taxon 431 strain F0610 (5-114)]
MYNKIILIGRIVATPELHKTNNDKSVARATIAVNRRYKDQNGEREADFINIVVWGKLAETLASYGSKGSLISVDGELRTR
KFEKNGQTNYVTEVLATGFQLLESRAQRAMRENNAGQDLVDLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=169986 AXE83_RS02605 WP_060955314.1 542113..542508(+) (ssbB/cilA) [Streptococcus sp. oral taxon 431 strain F0610 (5-114)]
ATGTATAATAAAATTATTCTTATTGGAAGAATCGTGGCAACACCAGAATTGCACAAAACCAACAATGACAAGTCCGTTGC
ACGAGCAACTATCGCAGTGAATCGCCGTTATAAAGATCAAAATGGGGAACGTGAAGCAGACTTCATCAATATTGTGGTCT
GGGGCAAATTGGCTGAAACCTTGGCTAGTTATGGAAGCAAAGGTAGTCTCATTTCTGTGGATGGCGAACTTCGTACCCGT
AAGTTTGAGAAGAATGGCCAGACCAACTATGTGACCGAAGTTCTCGCTACAGGCTTCCAACTTTTAGAAAGTCGCGCCCA
ACGTGCTATGCGTGAAAATAATGCAGGACAAGATTTGGTAGACCTGGTCTTGGAAGAGGAGGAACTTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0X8JXB4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae TIGR4

89.313

100

0.893
  ssbB/cilA Streptococcus mitis NCTC 12261

88.55

100

0.886
  ssbB/cilA Streptococcus pneumoniae Rx1

88.55

100

0.886
  ssbB/cilA Streptococcus pneumoniae D39

88.55

100

0.886
  ssbB/cilA Streptococcus pneumoniae R6

88.55

100

0.886
  ssbB/cilA Streptococcus mitis SK321

88.55

100

0.886
  ssbA Streptococcus mutans UA159

75.573

100

0.756
  ssbB Streptococcus sobrinus strain NIDR 6715-7

70.229

100

0.702
  ssbB Lactococcus lactis subsp. cremoris KW2

59.821

85.496

0.511
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

80.916

0.405
  ssb Latilactobacillus sakei subsp. sakei 23K

46.018

86.26

0.397

Multiple sequence alignment