Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AXE82_RS05680 Genome accession   NZ_CP014234
Coordinates   1301516..1302739 (-) Length   407 a.a.
NCBI ID   WP_062332389.1    Uniprot ID   -
Organism   Moraxella osloensis strain CCUG 350     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1296516..1307739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AXE82_RS05660 (AXE82_05660) - 1297346..1298449 (+) 1104 WP_082741424.1 bifunctional nicotinamide-nucleotide adenylyltransferase/Nudix hydroxylase -
  AXE82_RS05665 (AXE82_05665) - 1298518..1299924 (+) 1407 WP_062332386.1 nicotinate phosphoribosyltransferase -
  AXE82_RS05670 (AXE82_05670) coaE 1299982..1300638 (-) 657 WP_227713376.1 dephospho-CoA kinase -
  AXE82_RS05675 (AXE82_05675) pilD 1300635..1301510 (-) 876 WP_062332387.1 prepilin peptidase Machinery gene
  AXE82_RS05680 (AXE82_05680) pilC 1301516..1302739 (-) 1224 WP_062332389.1 type II secretion system F family protein Machinery gene
  AXE82_RS05685 (AXE82_05685) pilB 1302796..1304502 (-) 1707 WP_062332391.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AXE82_RS05690 (AXE82_05690) tpiA 1304936..1305790 (+) 855 WP_062332394.1 triose-phosphate isomerase -
  AXE82_RS05695 (AXE82_05695) secG 1305881..1306201 (+) 321 WP_062332397.1 preprotein translocase subunit SecG -
  AXE82_RS05710 (AXE82_05710) rimP 1306765..1307274 (+) 510 WP_062332400.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44870.88 Da        Isoelectric Point: 9.7054

>NTDB_id=169698 AXE82_RS05680 WP_062332389.1 1301516..1302739(-) (pilC) [Moraxella osloensis strain CCUG 350]
MAKVQTEMLLDFVYDGVNRRGEKVKGETTSRNIELAKAQLRKQGIQVKTIKKKPKPIFQMKKSIKAIDIAIFVRQLATMM
KAGVPLTQSFEIVADALDNPSMKELVLSVKSEVESGSTFAAALRKHPRYFDDLFCSLVEAGEQSGALETMLERVATYKEK
SELLKAKIKKALKYPIAVIVVAIIVTIILLVKVVPVFADLFNSFGAELPAFTRMVVSMSEWMQKWWWLLLFSIAGAVVGF
SEAKKRSKPFNDFLDRLTLKLPIFGNIAYQAVVARFSRTLSTTFAAGVPLIDALDSTAGATNNVVFYNATQKIKGDVATG
QQLQFSMRSTNLFPSMVIQMVGIGEESGSLEEMLDKVATYYENEVDNAVDGLTSLMEPMIMAILGVLVGGLVIAMYLPIF
QMGSVVG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=169698 AXE82_RS05680 WP_062332389.1 1301516..1302739(-) (pilC) [Moraxella osloensis strain CCUG 350]
ATGGCAAAAGTCCAAACAGAAATGTTATTAGACTTTGTCTATGATGGGGTCAATCGCCGTGGCGAAAAAGTCAAAGGCGA
AACCACCAGCCGCAATATTGAGCTGGCAAAAGCACAACTACGCAAGCAAGGCATCCAAGTCAAGACGATTAAGAAAAAAC
CCAAGCCTATTTTTCAAATGAAAAAAAGCATCAAGGCAATCGATATTGCTATCTTTGTGCGGCAGTTGGCTACGATGATG
AAAGCGGGCGTCCCCCTTACTCAGTCGTTTGAAATCGTTGCAGATGCGCTCGATAACCCCTCAATGAAAGAGTTGGTGCT
TAGTGTCAAGTCAGAAGTGGAATCAGGGAGCACCTTTGCTGCTGCGCTGCGCAAACATCCCAGATATTTTGATGACCTGT
TTTGTTCATTAGTAGAGGCAGGTGAGCAATCAGGTGCGCTTGAAACTATGCTTGAGCGTGTCGCAACGTACAAAGAAAAA
AGCGAGCTACTAAAAGCAAAAATTAAAAAAGCCTTGAAATACCCGATTGCGGTTATCGTGGTGGCGATTATCGTTACCAT
TATTTTGCTGGTCAAAGTGGTACCGGTGTTTGCTGATTTATTCAATTCATTTGGCGCAGAATTACCCGCGTTTACCCGAA
TGGTAGTCAGTATGTCGGAGTGGATGCAAAAATGGTGGTGGTTATTGCTATTTAGCATTGCAGGCGCTGTGGTTGGCTTT
TCTGAAGCTAAAAAACGTAGCAAGCCCTTTAATGACTTTTTAGACCGACTTACCTTAAAATTACCAATCTTTGGCAATAT
TGCTTATCAAGCGGTGGTTGCCCGTTTTTCCCGCACCTTGTCTACCACTTTTGCGGCAGGTGTGCCGCTGATTGATGCGT
TAGATTCAACCGCTGGGGCAACCAACAATGTGGTATTTTATAATGCCACGCAAAAAATTAAAGGTGATGTTGCGACGGGT
CAACAGCTGCAGTTTTCGATGCGTTCTACCAATCTTTTCCCCAGTATGGTTATCCAAATGGTCGGTATTGGTGAGGAGTC
AGGTAGTCTAGAGGAGATGCTTGATAAAGTGGCGACTTATTATGAAAACGAAGTGGACAACGCCGTAGATGGGTTAACAA
GTCTGATGGAACCGATGATTATGGCTATTTTGGGGGTGCTGGTAGGGGGTCTGGTGATTGCCATGTATCTACCAATTTTC
CAAATGGGCTCGGTGGTGGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

70.098

100

0.703
  pilC Acinetobacter baylyi ADP1

68.627

100

0.688
  pilC Pseudomonas stutzeri DSM 10701

64.051

97.052

0.622
  pilC Legionella pneumophila strain ERS1305867

56.391

98.034

0.553
  pilC Vibrio cholerae strain A1552

43.627

100

0.437
  pilG Neisseria gonorrhoeae MS11

44.361

98.034

0.435
  pilG Neisseria meningitidis 44/76-A

44.11

98.034

0.432
  pilC Vibrio campbellii strain DS40M4

41.25

98.28

0.405
  pilC Thermus thermophilus HB27

35.577

100

0.364

Multiple sequence alignment