Detailed information NTG0169242

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: RSJ17_RS01580
• Genome accession: NZ_CP014176
• Coordinates: 193780..194214 (+)
• Length: 144 a.a.
• NCBI ID: WP_039634470.1
• Uniprot ID: A0A0C1U2Y1
• Organism: Clostridium argentinense strain 89G
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 188780..199214

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RSJ17_RS01550 (RSJ17_01560)	-	189600..190748 (-)	1149	WP_039634459.1	aminotransferase class V-fold PLP-dependent enzyme	-
RSJ17_RS01555 (RSJ17_01565)	yedF	190981..191574 (+)	594	WP_039634461.1	sulfurtransferase-like selenium metabolism protein YedF	-
RSJ17_RS01560 (RSJ17_01570)	-	191593..191844 (+)	252	WP_039634463.1	DUF3343 domain-containing protein	-
RSJ17_RS01565 (RSJ17_01575)	-	192137..192832 (+)	696	WP_039634465.1	TraX family protein	-
RSJ17_RS01570 (RSJ17_01580)	-	193109..193300 (+)	192	WP_039634467.1	DUF951 domain-containing protein	-
RSJ17_RS01575 (RSJ17_01585)	rpsF	193478..193765 (+)	288	WP_039634468.1	30S ribosomal protein S6	-
RSJ17_RS01580 (RSJ17_01590)	ssbA	193780..194214 (+)	435	WP_039634470.1	single-stranded DNA-binding protein	Machinery gene
RSJ17_RS01585 (RSJ17_01595)	rpsR	194235..194480 (+)	246	WP_039634472.1	30S ribosomal protein S18	-
RSJ17_RS01590 (RSJ17_01600)	-	194975..195355 (+)	381	WP_039634474.1	hypothetical protein	-
RSJ17_RS01595 (RSJ17_01605)	-	195662..196285 (+)	624	WP_039634475.1	hypothetical protein	-
RSJ17_RS01600 (RSJ17_01610)	-	196361..197239 (+)	879	WP_039634478.1	hypothetical protein	-
RSJ17_RS01605 (RSJ17_01615)	-	197523..197840 (+)	318	WP_039634480.1	MazG-like family protein	-
RSJ17_RS01610 (RSJ17_01620)	-	197852..198850 (+)	999	WP_039634481.1	DUF2232 domain-containing protein	-

Sequence

Protein

• Length: 144 a.a.
• Molecular weight: 16091.99 Da
• Isoelectric Point: 4.8299

>NTDB_id=169242 RSJ17_RS01580 WP_039634470.1 193780..194214(+) (ssbA) [Clostridium argentinense strain 89G]
MNKVVLIGRLTKDPELKFTPGTGTAVTTFTVAVNRRFKKEGQPEADFIPVVVWGKQAESTANYMSKGKLISVAGRIETRS
YEAKDGTRRYVTEVVADEVHFLEWGEKSSDMNTRTNNYDHGGFPQDDLVSNDITPMDDGEDIPF

Nucleotide

• Length: 435 bp

>NTDB_id=169242 RSJ17_RS01580 WP_039634470.1 193780..194214(+) (ssbA) [Clostridium argentinense strain 89G]
ATGAATAAAGTTGTTTTAATCGGAAGATTAACAAAAGACCCAGAGTTAAAATTTACTCCAGGTACAGGAACAGCTGTAAC
CACTTTTACTGTTGCCGTTAATAGAAGATTTAAGAAAGAAGGCCAACCAGAAGCAGACTTCATTCCAGTAGTGGTTTGGG
GAAAGCAAGCTGAGAGCACTGCTAATTACATGAGTAAGGGTAAACTTATAAGTGTAGCTGGCAGAATAGAAACTCGTTCT
TATGAAGCAAAAGACGGCACAAGAAGATATGTAACTGAAGTTGTTGCTGATGAAGTTCATTTCCTTGAATGGGGAGAAAA
ATCATCAGATATGAATACAAGAACTAACAATTATGACCACGGCGGATTCCCACAGGATGATCTTGTATCAAATGATATAA
CTCCTATGGATGATGGCGAGGACATTCCATTTTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (1-102)

3D structure

• AlphaFold DB: A0A0C1U2Y1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	42.442	100	0.507
ssbB	Streptococcus sobrinus strain NIDR 6715-7	45.833	100	0.458
ssbB/cilA	Streptococcus mitis NCTC 12261	43.75	100	0.438
ssbB/cilA	Streptococcus pneumoniae TIGR4	43.056	100	0.431
ssbA	Streptococcus mutans UA159	42.759	100	0.431
ssbB/cilA	Streptococcus mitis SK321	42.361	100	0.424
ssbB/cilA	Streptococcus pneumoniae D39	42.361	100	0.424
ssbB/cilA	Streptococcus pneumoniae R6	42.361	100	0.424
ssbB/cilA	Streptococcus pneumoniae Rx1	42.361	100	0.424
ssb	Latilactobacillus sakei subsp. sakei 23K	52.885	72.222	0.382
ssbB	Bacillus subtilis subsp. subtilis str. 168	53.398	71.528	0.382