Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AL468_RS21490 Genome accession   NZ_CP014134
Coordinates   2539750..2540973 (-) Length   407 a.a.
NCBI ID   WP_104974817.1    Uniprot ID   -
Organism   Vibrio diabolicus strain FDAARGOS_99     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2534750..2545973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL468_RS21460 (AL468_12875) trmD 2535292..2536035 (+) 744 WP_005425529.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  AL468_RS21465 (AL468_12880) rplS 2536077..2536430 (+) 354 WP_005379971.1 50S ribosomal protein L19 -
  AL468_RS21470 (AL468_12885) yacG 2537091..2537285 (-) 195 WP_017635922.1 DNA gyrase inhibitor YacG -
  AL468_RS21475 (AL468_12890) zapD 2537433..2538173 (-) 741 WP_104974815.1 cell division protein ZapD -
  AL468_RS21480 (AL468_12895) coaE 2538201..2538815 (-) 615 WP_047008979.1 dephospho-CoA kinase -
  AL468_RS21485 (AL468_12900) pilD 2538816..2539685 (-) 870 WP_104974816.1 A24 family peptidase Machinery gene
  AL468_RS21490 (AL468_12905) pilC 2539750..2540973 (-) 1224 WP_104974817.1 type II secretion system F family protein Machinery gene
  AL468_RS21495 (AL468_12910) pilB 2540997..2542682 (-) 1686 WP_104974818.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AL468_RS21500 (AL468_12915) pilA 2542688..2543161 (-) 474 WP_012841419.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  AL468_RS21510 (AL468_12925) nadC 2543424..2544311 (-) 888 WP_104974819.1 carboxylating nicotinate-nucleotide diphosphorylase -
  AL468_RS21515 (AL468_12930) ampD 2544404..2544955 (+) 552 WP_104974820.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45279.46 Da        Isoelectric Point: 10.3992

>NTDB_id=168589 AL468_RS21490 WP_104974817.1 2539750..2540973(-) (pilC) [Vibrio diabolicus strain FDAARGOS_99]
MKTTTPQLKNFRWKGINSSGKKTSGQTLAMTEIEVRERLDAQHIKIKKLKKSSISFLTKLSHRVKGRDITVFTRQISTML
ITGVPLVQALKLVSENHKKAEMKSILMSVTRAVEAGTPMSKAMRTASEHFDPLYTDLIATGEQSGNLAEVFERLATYREK
NEQLRAKVIKALIYPAMVVLVALGVSFIMLTKVIPEFEKMFVGFGADLPWFTRQVLDLSAWTQNWSPFIALGSISLFISA
RILSKRSDSFRLILNRSVLKFPVLGPVLSKAAIAKFSRTLATGFTAGIPILTSLKTTSKTSGNLHYQLAIEEVYRDTAAG
MPMYVAMRNCNVFPELVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLSKILEPLIIVFLGIVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=168589 AL468_RS21490 WP_104974817.1 2539750..2540973(-) (pilC) [Vibrio diabolicus strain FDAARGOS_99]
ATGAAAACCACTACACCACAACTTAAAAACTTCCGCTGGAAAGGCATCAACAGTTCAGGCAAAAAGACGTCTGGACAAAC
CCTAGCGATGACAGAAATTGAAGTACGCGAGCGTCTAGACGCACAACACATCAAGATCAAGAAGTTAAAGAAAAGCAGTA
TCTCGTTTCTCACTAAACTCAGCCATCGCGTGAAAGGCAGAGACATCACGGTGTTTACCCGGCAAATTTCGACGATGTTG
ATAACCGGTGTCCCCTTAGTTCAGGCTTTAAAATTGGTATCAGAAAACCACAAAAAAGCAGAGATGAAATCCATTTTGAT
GAGCGTGACACGCGCCGTTGAAGCGGGTACGCCCATGTCAAAAGCCATGCGCACTGCAAGTGAACACTTTGACCCACTCT
ATACCGACCTTATCGCCACAGGTGAGCAATCCGGTAACTTAGCAGAAGTATTCGAGCGCTTAGCCACCTACCGAGAAAAA
AATGAACAACTCCGTGCGAAAGTGATCAAAGCCTTGATTTACCCAGCCATGGTAGTGCTAGTAGCGTTAGGCGTCTCGTT
TATCATGCTCACCAAAGTCATTCCCGAGTTTGAAAAAATGTTTGTTGGTTTTGGTGCTGACTTACCTTGGTTTACCAGGC
AAGTATTAGATCTTTCCGCCTGGACACAAAACTGGAGCCCATTTATAGCACTAGGCTCTATCAGTCTATTCATCTCGGCG
AGAATCCTCTCTAAGCGTTCAGATTCTTTTCGCTTAATCCTCAATCGCTCTGTGCTTAAATTTCCTGTTCTTGGCCCTGT
ATTATCAAAAGCCGCTATCGCCAAATTTAGTCGAACACTCGCCACAGGCTTTACAGCGGGTATTCCAATTCTAACCAGTT
TAAAAACCACATCAAAAACCTCAGGAAACTTACACTATCAACTCGCCATAGAAGAAGTTTACCGTGATACCGCCGCAGGT
ATGCCAATGTATGTTGCCATGCGTAACTGTAATGTGTTCCCTGAATTAGTGTTACAAATGGTCATGATCGGTGAAGAGTC
TGGTCGACTTGACGATATGCTCAATAAAGTTGCAACGATCTACGAGTTTGAAGTCGATAACACCGTCGACAACCTTAGTA
AAATTCTAGAGCCGCTAATTATCGTTTTTTTAGGCATCGTTGTTGGCGGATTAGTGACAGCAATGTACTTGCCAATCTTT
AACTTAATGAGTGTATTGGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

87.224

100

0.872
  pilC Vibrio cholerae strain A1552

73.58

99.509

0.732
  pilC Acinetobacter baylyi ADP1

42.75

98.28

0.42
  pilC Acinetobacter baumannii D1279779

41.439

99.017

0.41
  pilG Neisseria gonorrhoeae MS11

40.494

99.509

0.403
  pilC Legionella pneumophila strain ERS1305867

40.295

100

0.403
  pilG Neisseria meningitidis 44/76-A

40.247

99.509

0.4
  pilC Pseudomonas stutzeri DSM 10701

40.909

97.297

0.398

Multiple sequence alignment