Detailed information NTG0168588

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AL468_RS21485
• Genome accession: NZ_CP014134
• Coordinates: 2538816..2539685 (-)
• Length: 289 a.a.
• NCBI ID: WP_104974816.1
• Uniprot ID: -
• Organism: Vibrio diabolicus strain FDAARGOS_99
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2533816..2544685

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AL468_RS21450 (AL468_12865)	rpsP	2534438..2534686 (+)	249	WP_005379962.1	30S ribosomal protein S16	-
AL468_RS21455 (AL468_12870)	rimM	2534716..2535264 (+)	549	WP_005379964.1	ribosome maturation factor RimM	-
AL468_RS21460 (AL468_12875)	trmD	2535292..2536035 (+)	744	WP_005425529.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
AL468_RS21465 (AL468_12880)	rplS	2536077..2536430 (+)	354	WP_005379971.1	50S ribosomal protein L19	-
AL468_RS21470 (AL468_12885)	yacG	2537091..2537285 (-)	195	WP_017635922.1	DNA gyrase inhibitor YacG	-
AL468_RS21475 (AL468_12890)	zapD	2537433..2538173 (-)	741	WP_104974815.1	cell division protein ZapD	-
AL468_RS21480 (AL468_12895)	coaE	2538201..2538815 (-)	615	WP_047008979.1	dephospho-CoA kinase	-
AL468_RS21485 (AL468_12900)	pilD	2538816..2539685 (-)	870	WP_104974816.1	A24 family peptidase	Machinery gene
AL468_RS21490 (AL468_12905)	pilC	2539750..2540973 (-)	1224	WP_104974817.1	type II secretion system F family protein	Machinery gene
AL468_RS21495 (AL468_12910)	pilB	2540997..2542682 (-)	1686	WP_104974818.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AL468_RS21500 (AL468_12915)	pilA	2542688..2543161 (-)	474	WP_012841419.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
AL468_RS21510 (AL468_12925)	nadC	2543424..2544311 (-)	888	WP_104974819.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32509.67 Da
• Isoelectric Point: 7.0195

>NTDB_id=168588 AL468_RS21485 WP_104974816.1 2538816..2539685(-) (pilD) [Vibrio diabolicus strain FDAARGOS_99]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKEVLTLSVPRSSCQKCATPIRIR
DNIPVISWLLLKGKCHNCQTAISARYPLIELLTAFCSGFVAYHFGFSYFTVALLFFTFILIAATFIDLDTMLLPDQLTLP
LTWAGIALALVEISPVTLQDSVIGAIAGYLCLWSIYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGI
AFGIIQLRLQKQGIEKAFPFGPYLAIAGWISLIWGDQILNWYFTSVLGV

Nucleotide

• Length: 870 bp

>NTDB_id=168588 AL468_RS21485 WP_104974816.1 2538816..2539685(-) (pilD) [Vibrio diabolicus strain FDAARGOS_99]
ATGGAAGTATTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCACCATCTTCGGTCTGATCGTGGGTAGCTTCCTCAA
TGTGGTTATTTATCGACTACCTAAAATCATGGAACTAGAATGGCGACGCGAATGTGCCGAGTCATTTCCTGAATACAAAA
TAGAACCTCCTAAAGAAGTGCTGACGTTGAGCGTCCCACGCTCCTCCTGTCAGAAGTGCGCAACGCCGATACGTATTCGA
GACAACATCCCTGTGATTAGCTGGCTGCTTTTAAAAGGCAAATGCCACAACTGTCAGACAGCCATTAGCGCACGCTATCC
ACTGATTGAACTGCTCACTGCGTTCTGCTCAGGCTTTGTCGCTTACCACTTTGGTTTTAGTTACTTTACCGTTGCCCTAC
TCTTTTTCACTTTTATCTTAATCGCCGCAACATTTATCGATCTCGATACTATGTTGTTACCTGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCCTTAGCATTAGTCGAAATAAGTCCTGTTACTCTACAAGATTCTGTCATTGGTGCTATTGC
TGGTTACCTATGTCTCTGGTCCATTTACTGGGGCTTTAAGCTACTTACTGGTAAAGAAGGAATGGGATATGGTGATTTTA
AACTACTAGCAGCACTAGGGGCTTGGCTGGGCTGGCAGTCACTGCCGATGATCATTCTACTTTCTTCTGTGGTTGGCATC
GCATTTGGCATCATTCAACTACGCTTGCAAAAACAGGGGATTGAAAAAGCTTTTCCTTTCGGTCCGTACTTAGCAATTGC
TGGTTGGATAAGCTTAATTTGGGGCGACCAGATTTTAAACTGGTACTTTACTTCAGTTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	90.657	100	0.907
pilD	Vibrio cholerae strain A1552	73.264	99.654	0.73
pilD	Acinetobacter baumannii D1279779	51.812	95.502	0.495
pilD	Acinetobacter nosocomialis M2	51.852	93.426	0.484
pilD	Neisseria gonorrhoeae MS11	48.188	95.502	0.46