Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | AL521_RS07860 | Genome accession | NZ_CP014132 |
| Coordinates | 1621513..1621830 (-) | Length | 105 a.a. |
| NCBI ID | WP_001831271.1 | Uniprot ID | A0A9Q5JKE9 |
| Organism | Staphylococcus epidermidis strain FDAARGOS_161 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1616513..1626830
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AL521_RS07825 (AL521_07825) | gcvPA | 1617039..1618385 (-) | 1347 | WP_104992867.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
| AL521_RS07830 (AL521_07830) | gcvT | 1618405..1619496 (-) | 1092 | WP_001831107.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| AL521_RS07835 (AL521_07835) | - | 1619714..1620226 (-) | 513 | WP_104992868.1 | shikimate kinase | - |
| AL521_RS07845 (AL521_07845) | - | 1620391..1620882 (-) | 492 | WP_002440043.1 | competence type IV pilus minor pilin ComGF | - |
| AL521_RS07850 (AL521_07850) | - | 1620806..1621099 (-) | 294 | WP_001831116.1 | hypothetical protein | - |
| AL521_RS07855 (AL521_07855) | comGD | 1621086..1621523 (-) | 438 | WP_001831025.1 | competence type IV pilus minor pilin ComGD | - |
| AL521_RS07860 (AL521_07860) | comGC | 1621513..1621830 (-) | 318 | WP_001831271.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| AL521_RS07865 (AL521_07865) | comGB | 1621848..1622915 (-) | 1068 | WP_001831131.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| AL521_RS07870 (AL521_07870) | comGA | 1622887..1623861 (-) | 975 | WP_001831109.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| AL521_RS07875 (AL521_07875) | - | 1623918..1624541 (-) | 624 | WP_001831016.1 | MBL fold metallo-hydrolase | - |
| AL521_RS07880 (AL521_07880) | - | 1624541..1624867 (-) | 327 | WP_001831234.1 | MTH1187 family thiamine-binding protein | - |
| AL521_RS07885 (AL521_07885) | - | 1624867..1625853 (-) | 987 | WP_001831113.1 | ROK family glucokinase | - |
| AL521_RS07890 (AL521_07890) | - | 1625853..1626053 (-) | 201 | WP_001831138.1 | YqgQ family protein | - |
Sequence
Protein
Download Length: 105 a.a. Molecular weight: 11491.58 Da Isoelectric Point: 9.7429
>NTDB_id=168532 AL521_RS07860 WP_001831271.1 1621513..1621830(-) (comGC) [Staphylococcus epidermidis strain FDAARGOS_161]
MKTLKLLKKTRAFTLIEMLLVLLIISLLLILIIPNIAKQTSHIQSTGCDAQVKMVNSQIEAYALKHNRNPSNIDDLVSDG
FIKEGQKTCKSGQTISIANGEAVAN
MKTLKLLKKTRAFTLIEMLLVLLIISLLLILIIPNIAKQTSHIQSTGCDAQVKMVNSQIEAYALKHNRNPSNIDDLVSDG
FIKEGQKTCKSGQTISIANGEAVAN
Nucleotide
Download Length: 318 bp
>NTDB_id=168532 AL521_RS07860 WP_001831271.1 1621513..1621830(-) (comGC) [Staphylococcus epidermidis strain FDAARGOS_161]
ATGAAAACATTGAAATTATTGAAAAAAACACGAGCATTTACCTTGATAGAAATGCTTTTAGTATTACTAATAATAAGTTT
ATTGTTAATACTTATAATTCCAAATATTGCAAAACAAACATCTCATATTCAGTCAACTGGATGTGATGCTCAAGTTAAAA
TGGTAAACAGTCAAATAGAAGCCTACGCTTTAAAACATAATCGCAACCCTTCTAATATTGATGATTTGGTTTCAGATGGT
TTTATAAAAGAAGGACAAAAAACATGTAAATCCGGTCAGACAATTAGTATTGCAAATGGAGAAGCAGTTGCCAATTAA
ATGAAAACATTGAAATTATTGAAAAAAACACGAGCATTTACCTTGATAGAAATGCTTTTAGTATTACTAATAATAAGTTT
ATTGTTAATACTTATAATTCCAAATATTGCAAAACAAACATCTCATATTCAGTCAACTGGATGTGATGCTCAAGTTAAAA
TGGTAAACAGTCAAATAGAAGCCTACGCTTTAAAACATAATCGCAACCCTTCTAATATTGATGATTTGGTTTCAGATGGT
TTTATAAAAGAAGGACAAAAAACATGTAAATCCGGTCAGACAATTAGTATTGCAAATGGAGAAGCAGTTGCCAATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Staphylococcus aureus MW2 |
87.255 |
97.143 |
0.848 |
| comGC | Staphylococcus aureus N315 |
87.255 |
97.143 |
0.848 |
| comGC/cglC | Streptococcus mitis SK321 |
44.66 |
98.095 |
0.438 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
44.681 |
89.524 |
0.4 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
44.681 |
89.524 |
0.4 |
| comGC/cglC | Streptococcus pneumoniae D39 |
44.681 |
89.524 |
0.4 |
| comGC/cglC | Streptococcus pneumoniae R6 |
44.681 |
89.524 |
0.4 |
| comYC | Streptococcus mutans UA159 |
47.674 |
81.905 |
0.39 |
| comYC | Streptococcus mutans UA140 |
47.674 |
81.905 |
0.39 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
46.512 |
81.905 |
0.381 |
| comGC | Lactococcus lactis subsp. cremoris KW2 |
47.561 |
78.095 |
0.371 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
50 |
74.286 |
0.371 |
| comYC | Streptococcus suis isolate S10 |
48.718 |
74.286 |
0.362 |
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
41.758 |
86.667 |
0.362 |