Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AL543_RS07650 Genome accession   NZ_CP014043
Coordinates   199799..201025 (+) Length   408 a.a.
NCBI ID   WP_061051581.1    Uniprot ID   -
Organism   Vibrio mimicus strain FDAARGOS_112     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 194799..206025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL543_RS07625 (AL543_06895) fldB 195165..195683 (+) 519 WP_061051576.1 flavodoxin FldB -
  AL543_RS07630 (AL543_06900) ampD 195741..196289 (-) 549 WP_061051577.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  AL543_RS07635 (AL543_06905) nadC 196467..197357 (+) 891 WP_061051578.1 carboxylating nicotinate-nucleotide diphosphorylase -
  AL543_RS07640 (AL543_06910) pilA 197602..198072 (+) 471 WP_061051579.1 pilin Machinery gene
  AL543_RS07645 (AL543_06915) pilB 198072..199760 (+) 1689 WP_061051580.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AL543_RS07650 (AL543_06920) pilC 199799..201025 (+) 1227 WP_061051581.1 type II secretion system F family protein Machinery gene
  AL543_RS07655 (AL543_06925) pilD 201088..201963 (+) 876 WP_061051582.1 prepilin peptidase Machinery gene
  AL543_RS07660 (AL543_06930) coaE 201960..202568 (+) 609 WP_061051583.1 dephospho-CoA kinase -
  AL543_RS07665 (AL543_06935) zapD 202600..203340 (+) 741 WP_061051584.1 cell division protein ZapD -
  AL543_RS07670 (AL543_06940) yacG 203591..203788 (+) 198 WP_000162865.1 DNA gyrase inhibitor YacG -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45065.29 Da        Isoelectric Point: 10.3551

>NTDB_id=167866 AL543_RS07650 WP_061051581.1 199799..201025(+) (pilC) [Vibrio mimicus strain FDAARGOS_112]
MKATQNVALKNYRWKGINSNGKKVSGQMLALTELEVRDKLKEQHIQIKKIKKGSVSVFARITHRVKGKDITILTRQLATM
LTTGVPIVQALKLVGDNHRKAEMKSILAQITKGVEAGTPLSKAMRTASAHFDTLYVDLVETGEMSGNLPEVFERLATYRE
KSEQLRAKVIKALIYPSMVVLVALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQAYSLWAFAAIGAAIFG
LKALRKNSFQIRLKTSRLGLRFPIIGNVLAKASIAKFSRTLATSFAAGIPILASLKTTAKTSGNVHFETAINEVYRDTAA
GMPMYIAMRNTEAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGVVVGGLVVAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=167866 AL543_RS07650 WP_061051581.1 199799..201025(+) (pilC) [Vibrio mimicus strain FDAARGOS_112]
ATGAAAGCGACCCAAAATGTAGCCTTGAAAAACTATCGCTGGAAAGGTATCAACAGCAACGGAAAAAAAGTCTCCGGACA
GATGTTGGCGCTAACCGAATTAGAGGTGCGCGACAAACTAAAAGAACAACACATTCAAATCAAAAAAATCAAGAAAGGCA
GTGTTTCCGTGTTTGCGCGTATTACTCATCGCGTCAAAGGCAAAGACATCACCATTCTCACCCGACAATTGGCTACCATG
CTCACTACTGGTGTACCCATTGTGCAAGCGCTCAAACTGGTGGGAGATAACCATAGAAAGGCTGAGATGAAATCGATCTT
GGCACAAATCACCAAAGGCGTTGAAGCAGGCACACCACTTTCAAAAGCCATGCGCACTGCGAGCGCCCATTTCGATACCT
TGTATGTCGATCTGGTGGAAACGGGAGAAATGTCCGGCAATCTGCCCGAAGTATTTGAACGCTTGGCTACCTATCGTGAG
AAAAGTGAACAACTTCGCGCCAAGGTGATCAAAGCATTGATCTACCCAAGCATGGTGGTACTGGTGGCTTTAGGGGTTTC
TTACCTGATGCTCACTATGGTTATCCCTGAATTTGAATCCATGTTTAAAGGCTTTGGGGCGGAGCTTCCTTGGTTTACTC
AACAAGTGTTAAAACTCTCACATTGGGTTCAGGCATACAGCCTATGGGCATTTGCCGCGATTGGAGCTGCAATATTTGGA
CTCAAAGCGCTACGTAAAAACTCTTTTCAGATTCGCTTAAAGACCAGCCGGTTAGGGCTGAGATTTCCAATTATCGGCAA
TGTGCTGGCTAAGGCATCGATCGCCAAATTCAGCCGAACTCTCGCCACAAGCTTTGCAGCGGGTATTCCGATCCTCGCCA
GTTTAAAAACCACCGCCAAAACCTCTGGCAATGTGCACTTTGAAACTGCAATCAACGAAGTATACCGAGATACTGCCGCG
GGTATGCCCATGTACATTGCAATGCGCAATACCGAAGCCTTTCCAGAGATGGTGCTGCAAATGGTGATGATAGGTGAAGA
ATCAGGCCAATTGGATGACATGCTCAACAAGGTCGCCACCATTTACGAATTTGAAGTCGATAACACAGTCGATAACTTAG
GTAAAATCCTTGAACCCTTGATTATCGTATTTCTTGGTGTTGTCGTAGGTGGCTTGGTCGTTGCTATGTACCTACCTATC
TTTAACTTAATGAGTGTATTGGGTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

95.833

100

0.958
  pilC Vibrio campbellii strain DS40M4

74.5

98.039

0.73
  pilC Acinetobacter baylyi ADP1

42.157

100

0.422
  pilC Pseudomonas stutzeri DSM 10701

42.289

98.529

0.417
  pilC Acinetobacter baumannii D1279779

42.5

98.039

0.417
  pilG Neisseria gonorrhoeae MS11

42.105

97.794

0.412
  pilC Legionella pneumophila strain ERS1305867

41.814

97.304

0.407
  pilG Neisseria meningitidis 44/76-A

41.604

97.794

0.407

Multiple sequence alignment