Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | AL543_RS07640 | Genome accession | NZ_CP014043 |
| Coordinates | 197602..198072 (+) | Length | 156 a.a. |
| NCBI ID | WP_061051579.1 | Uniprot ID | - |
| Organism | Vibrio mimicus strain FDAARGOS_112 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 192602..203072
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AL543_RS07615 (AL543_06885) | dsbC | 193350..194102 (-) | 753 | WP_061051575.1 | bifunctional protein-disulfide isomerase/oxidoreductase DsbC | - |
| AL543_RS07620 (AL543_06890) | xerD | 194119..194997 (-) | 879 | WP_188318481.1 | site-specific tyrosine recombinase XerD | - |
| AL543_RS07625 (AL543_06895) | fldB | 195165..195683 (+) | 519 | WP_061051576.1 | flavodoxin FldB | - |
| AL543_RS07630 (AL543_06900) | ampD | 195741..196289 (-) | 549 | WP_061051577.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| AL543_RS07635 (AL543_06905) | nadC | 196467..197357 (+) | 891 | WP_061051578.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| AL543_RS07640 (AL543_06910) | pilA | 197602..198072 (+) | 471 | WP_061051579.1 | pilin | Machinery gene |
| AL543_RS07645 (AL543_06915) | pilB | 198072..199760 (+) | 1689 | WP_061051580.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| AL543_RS07650 (AL543_06920) | pilC | 199799..201025 (+) | 1227 | WP_061051581.1 | type II secretion system F family protein | Machinery gene |
| AL543_RS07655 (AL543_06925) | pilD | 201088..201963 (+) | 876 | WP_061051582.1 | prepilin peptidase | Machinery gene |
| AL543_RS07660 (AL543_06930) | coaE | 201960..202568 (+) | 609 | WP_061051583.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 16537.12 Da Isoelectric Point: 9.1070
>NTDB_id=167864 AL543_RS07640 WP_061051579.1 197602..198072(+) (pilA) [Vibrio mimicus strain FDAARGOS_112]
MKAYKNKQQKGFTLIELMIVVAIIGILAAFAVPAYQDYTKKATLSEFPKVAAAAKLAVELCSHENASDDATFKSNCKTPG
TKGIPAVFTLNQIKVTVGEISGSVGVIAKAEAAKGPIAQNEQFIMVATYSANGLKWDNSCKKADGSVNTDYCPAKN
MKAYKNKQQKGFTLIELMIVVAIIGILAAFAVPAYQDYTKKATLSEFPKVAAAAKLAVELCSHENASDDATFKSNCKTPG
TKGIPAVFTLNQIKVTVGEISGSVGVIAKAEAAKGPIAQNEQFIMVATYSANGLKWDNSCKKADGSVNTDYCPAKN
Nucleotide
Download Length: 471 bp
>NTDB_id=167864 AL543_RS07640 WP_061051579.1 197602..198072(+) (pilA) [Vibrio mimicus strain FDAARGOS_112]
ATGAAAGCGTATAAAAACAAACAACAGAAAGGTTTTACCTTAATTGAATTGATGATTGTGGTGGCGATTATTGGAATTCT
GGCAGCTTTTGCTGTACCTGCATATCAAGACTACACAAAGAAAGCGACATTGTCAGAGTTCCCTAAAGTAGCTGCAGCAG
CCAAACTAGCTGTAGAACTGTGTTCTCATGAAAATGCATCGGACGATGCAACATTTAAAAGTAATTGTAAAACACCTGGG
ACTAAGGGTATTCCTGCTGTATTTACACTAAATCAAATAAAAGTAACTGTAGGGGAGATTTCAGGCTCAGTTGGCGTGAT
TGCAAAAGCAGAGGCCGCGAAAGGGCCAATTGCACAAAATGAACAATTCATTATGGTAGCAACCTACTCGGCTAACGGTC
TAAAGTGGGATAACTCTTGTAAAAAAGCTGACGGTTCAGTAAATACTGATTATTGCCCTGCTAAAAATTAA
ATGAAAGCGTATAAAAACAAACAACAGAAAGGTTTTACCTTAATTGAATTGATGATTGTGGTGGCGATTATTGGAATTCT
GGCAGCTTTTGCTGTACCTGCATATCAAGACTACACAAAGAAAGCGACATTGTCAGAGTTCCCTAAAGTAGCTGCAGCAG
CCAAACTAGCTGTAGAACTGTGTTCTCATGAAAATGCATCGGACGATGCAACATTTAAAAGTAATTGTAAAACACCTGGG
ACTAAGGGTATTCCTGCTGTATTTACACTAAATCAAATAAAAGTAACTGTAGGGGAGATTTCAGGCTCAGTTGGCGTGAT
TGCAAAAGCAGAGGCCGCGAAAGGGCCAATTGCACAAAATGAACAATTCATTATGGTAGCAACCTACTCGGCTAACGGTC
TAAAGTGGGATAACTCTTGTAAAAAAGCTGACGGTTCAGTAAATACTGATTATTGCCCTGCTAAAAATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio campbellii strain DS40M4 |
58.065 |
99.359 |
0.577 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
40.26 |
98.718 |
0.397 |
| pilA2 | Legionella pneumophila str. Paris |
39.61 |
98.718 |
0.391 |
| pilA | Haemophilus influenzae 86-028NP |
41.727 |
89.103 |
0.372 |
| pilA | Haemophilus influenzae Rd KW20 |
39.86 |
91.667 |
0.365 |