Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AL536_RS43030 Genome accession   NZ_CP014035
Coordinates   2685416..2686531 (-) Length   371 a.a.
NCBI ID   WP_047461837.1    Uniprot ID   -
Organism   Vibrio fluvialis strain ATCC 33809     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2680416..2691531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL536_RS43000 (AL536_20060) hemF 2680973..2681887 (-) 915 WP_061057037.1 oxygen-dependent coproporphyrinogen oxidase -
  AL536_RS43005 (AL536_20065) - 2681907..2682464 (-) 558 WP_061057038.1 L-threonylcarbamoyladenylate synthase -
  AL536_RS43010 (AL536_20070) purE 2682663..2683148 (+) 486 WP_061057039.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  AL536_RS43015 (AL536_20075) - 2683152..2684285 (+) 1134 WP_061057040.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  AL536_RS43020 (AL536_20080) - 2684319..2684906 (-) 588 WP_024374494.1 type I DNA topoisomerase -
  AL536_RS43025 (AL536_20085) - 2684937..2685413 (-) 477 WP_020332565.1 DUF494 family protein -
  AL536_RS43030 (AL536_20090) dprA 2685416..2686531 (-) 1116 WP_047461837.1 DNA-processing protein DprA Machinery gene
  AL536_RS43035 (AL536_20095) - 2686531..2687649 (-) 1119 WP_061057041.1 LysM peptidoglycan-binding domain-containing protein -
  AL536_RS43040 (AL536_20100) def 2687789..2688301 (+) 513 WP_020332568.1 peptide deformylase -
  AL536_RS43045 (AL536_20105) fmt 2688320..2689267 (+) 948 WP_061057246.1 methionyl-tRNA formyltransferase -
  AL536_RS43050 (AL536_20110) rsmB 2689318..2690598 (+) 1281 WP_061057042.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 40570.05 Da        Isoelectric Point: 6.1277

>NTDB_id=167705 AL536_RS43030 WP_047461837.1 2685416..2686531(-) (dprA) [Vibrio fluvialis strain ATCC 33809]
MLERDLAAWLAFSFTPQLGIRTLQRLASRYALSDLKQHLNRDGLAVGLKDNQIQYLQRQADQDVDACLRWSEQADNRHIL
TPFHAYYPSLLTEIAAAPPVLFVEGRLEALRAPQIAIVGSRNASIDSQQIAHQFATQLVEHGLVVTSGLALGIDGYAHDG
ALKAGGETIAVLGSGLECIYPARHRALAGRIVDRGALVSEFRPDAKPRPDHFPRRNRIISGLSLGVLVVEAAEKSGSLIT
ARYAAEQSREVFVVPGSIRNPNSLGSNQLIRQGACLVQHVDHILEEVSSLMDWSRNQSQPEQTELFSGTYNEEELPFPEL
LANVGGEATPVDILANRTNIPVQDVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=167705 AL536_RS43030 WP_047461837.1 2685416..2686531(-) (dprA) [Vibrio fluvialis strain ATCC 33809]
ATGCTCGAACGCGATCTGGCTGCTTGGCTGGCTTTCAGTTTTACTCCTCAACTCGGTATCCGAACATTGCAGCGTTTAGC
CAGTCGTTACGCGCTGTCTGACCTCAAACAACACCTGAATCGTGACGGCTTGGCCGTAGGACTGAAAGACAACCAGATTC
AGTATTTGCAGCGGCAGGCCGATCAAGACGTCGATGCCTGCCTGCGTTGGAGTGAGCAGGCTGATAATCGCCATATTCTG
ACGCCGTTTCATGCGTACTATCCCTCGTTATTGACCGAAATCGCCGCCGCTCCGCCAGTGCTGTTTGTGGAGGGGCGGCT
TGAAGCGCTGCGTGCGCCGCAAATTGCTATTGTCGGCAGTCGCAACGCCAGTATCGACAGTCAGCAAATCGCTCATCAAT
TTGCCACGCAATTGGTCGAACACGGTTTGGTGGTCACCAGTGGTCTGGCGCTTGGTATTGATGGCTACGCGCATGATGGC
GCACTCAAAGCGGGTGGGGAAACTATTGCGGTGCTGGGCTCGGGGCTGGAATGTATTTATCCGGCTCGCCATCGCGCGTT
GGCGGGGCGTATTGTTGACAGAGGCGCCTTGGTGTCGGAATTTCGCCCTGATGCCAAGCCTCGACCTGATCATTTTCCGC
GTCGTAATCGTATTATCAGTGGGTTGTCATTGGGCGTTCTGGTGGTGGAAGCGGCGGAAAAAAGTGGCTCGCTCATCACC
GCGCGTTATGCCGCCGAACAGAGCCGAGAGGTGTTTGTCGTGCCGGGCTCAATTCGCAACCCGAATAGCCTCGGCAGTAA
CCAGTTGATTCGACAAGGGGCGTGTTTGGTACAACATGTCGATCATATTCTCGAAGAAGTCAGCAGTTTGATGGACTGGA
GCCGAAATCAGTCACAACCTGAGCAGACAGAACTTTTTTCTGGCACATATAACGAAGAAGAATTGCCATTTCCCGAGCTG
TTAGCTAACGTAGGGGGAGAGGCTACACCAGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAGGATGTCATGAT
GCAGCTCCTGGAGCTTGAGCTTTCAGGGCATGTTGTTGCAGTTTCCGGTGGCTATATTCGTAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(319-364)

DNA recombination-mediator protein A (DNA_processg_A)

(75-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio cholerae strain A1552

64.69

100

0.647
  dprA Vibrio campbellii strain DS40M4

64.85

98.922

0.642
  dprA Glaesserella parasuis strain SC1401

47.074

100

0.477
  dprA Legionella pneumophila strain ERS1305867

43.681

98.113

0.429
  dprA Neisseria meningitidis strain C311

37.688

100

0.404
  dprA Neisseria meningitidis MC58

37.688

100

0.404
  dprA Haemophilus influenzae Rd KW20

44.012

90.027

0.396
  dprA Neisseria gonorrhoeae MS11

36.181

100

0.388
  dprA Acinetobacter baumannii D1279779

42.216

90.027

0.38
  dprA Neisseria gonorrhoeae strain FA1090

35.696

100

0.38
  dprA Acinetobacter baylyi ADP1

41.916

90.027

0.377

Multiple sequence alignment