Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AL536_RS30935 Genome accession   NZ_CP014035
Coordinates   106288..107514 (-) Length   408 a.a.
NCBI ID   WP_061056141.1    Uniprot ID   -
Organism   Vibrio fluvialis strain ATCC 33809     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 101288..112514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AL536_RS30910 (AL536_08130) parC 101407..103680 (+) 2274 WP_047459105.1 DNA topoisomerase IV subunit A -
  AL536_RS30915 (AL536_08135) yacG 103731..103928 (-) 198 WP_020332195.1 DNA gyrase inhibitor YacG -
  AL536_RS30920 (AL536_08140) zapD 103983..104723 (-) 741 WP_020332196.1 cell division protein ZapD -
  AL536_RS30925 (AL536_08145) coaE 104756..105364 (-) 609 WP_061056140.1 dephospho-CoA kinase -
  AL536_RS30930 (AL536_08150) pilD 105367..106236 (-) 870 WP_024374403.1 prepilin peptidase Machinery gene
  AL536_RS30935 (AL536_08155) pilC 106288..107514 (-) 1227 WP_061056141.1 type II secretion system F family protein Machinery gene
  AL536_RS30940 (AL536_08160) pilB 107550..109238 (-) 1689 WP_061056142.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AL536_RS30945 (AL536_08165) pilA 109248..109667 (-) 420 WP_047459095.1 pilin Machinery gene
  AL536_RS30950 (AL536_08170) nadC 109898..110785 (-) 888 WP_061056143.1 carboxylating nicotinate-nucleotide diphosphorylase -
  AL536_RS30955 (AL536_08175) ampD 110938..111489 (+) 552 WP_061056144.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  AL536_RS30960 (AL536_08180) fldB 111494..112015 (-) 522 WP_020430452.1 flavodoxin FldB -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44748.98 Da        Isoelectric Point: 10.5318

>NTDB_id=167678 AL536_RS30935 WP_061056141.1 106288..107514(-) (pilC) [Vibrio fluvialis strain ATCC 33809]
MKPTKGPELKNYRWKGVNSTGKKVAGQTLAISEIEVRDKLKEQHIQVKKIKKGSVSFLTRLTNRVKTKDITILTRQLATM
LTTGVPIVQALKLVGDNHRKAEMKSILAQITKGVEAGTPISKAMRTASTHFDALYVDLIQTGEQSGNLAEVFERLATYRE
KSEQLRAKVIKALIYPSMVILVALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQILKLSHGVQAYSAGAFIASLSLVFG
IKAARKKSFVVRLKTSQLSLRFPIIGGVLAKAAIAKFSRTLATSFSAGIPILASLKTTAKTAGNVHFETAIQDVHRHTAA
GMPMYIAMRNTQAFPEMVLQMVMIGEESGKLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGIVVGGLVVAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=167678 AL536_RS30935 WP_061056141.1 106288..107514(-) (pilC) [Vibrio fluvialis strain ATCC 33809]
ATGAAACCGACCAAAGGCCCTGAGTTAAAAAACTATCGCTGGAAAGGCGTCAACAGCACTGGAAAGAAAGTCGCGGGACA
GACACTGGCTATCAGTGAAATAGAAGTCCGCGACAAACTGAAAGAACAGCACATTCAGGTTAAGAAGATCAAAAAAGGCA
GCGTGTCATTTCTGACTCGTCTCACCAATCGGGTCAAAACTAAAGACATCACCATCCTAACCCGCCAGCTTGCCACCATG
CTGACCACCGGAGTGCCAATTGTGCAGGCACTTAAATTGGTCGGCGATAATCATCGTAAAGCCGAGATGAAATCGATTCT
GGCGCAAATTACCAAAGGCGTCGAAGCCGGTACGCCGATTTCCAAAGCGATGCGCACTGCCAGCACTCACTTTGACGCGT
TGTACGTCGACTTAATTCAGACTGGCGAGCAGTCCGGCAATCTTGCCGAAGTCTTTGAACGCCTTGCCACCTATCGGGAA
AAAAGTGAGCAACTGCGCGCGAAAGTAATCAAAGCGCTGATCTATCCCAGCATGGTCATTCTGGTGGCACTCGGCGTCTC
CTATTTGATGCTGACGATGGTCATTCCAGAGTTCGAAAGTATGTTCAAGGGTTTTGGGGCTGAACTGCCTTGGTTTACTC
AGCAGATCCTCAAGTTATCGCATGGGGTACAAGCCTACAGTGCGGGGGCGTTCATCGCGTCATTGAGCTTGGTGTTTGGC
ATCAAAGCGGCGCGGAAAAAATCCTTCGTCGTCCGTCTTAAAACCAGCCAGCTCAGCCTGCGTTTTCCCATCATTGGGGG
TGTGCTTGCCAAAGCCGCAATTGCCAAATTCAGCCGCACTCTGGCGACCAGCTTCAGTGCGGGAATTCCGATACTCGCCA
GCCTCAAAACCACCGCTAAAACGGCAGGTAACGTGCATTTTGAAACCGCCATTCAGGATGTTCACCGCCATACGGCAGCA
GGGATGCCGATGTATATTGCAATGCGCAACACACAAGCCTTTCCGGAAATGGTGTTGCAAATGGTGATGATCGGCGAGGA
GTCCGGCAAGCTCGACGACATGCTCAATAAAGTCGCCACCATCTATGAGTTTGAAGTCGACAACACCGTCGACAATCTGG
GCAAAATTCTTGAACCGCTGATTATCGTATTTTTGGGCATTGTGGTCGGTGGATTGGTGGTGGCGATGTACCTGCCAATC
TTTAACTTAATGAGTGTATTAGGTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

87.01

100

0.87
  pilC Vibrio campbellii strain DS40M4

72.84

99.265

0.723
  pilC Acinetobacter baumannii D1279779

41.667

100

0.417
  pilC Acinetobacter baylyi ADP1

41.562

97.304

0.404
  pilC Legionella pneumophila strain ERS1305867

41.103

97.794

0.402
  pilC Pseudomonas stutzeri DSM 10701

39.899

97.059

0.387
  pilG Neisseria gonorrhoeae MS11

39.303

98.529

0.387
  pilG Neisseria meningitidis 44/76-A

38.806

98.529

0.382

Multiple sequence alignment