Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ASL16_RS10770 Genome accession   NZ_CP013953
Coordinates   2119860..2120285 (-) Length   141 a.a.
NCBI ID   WP_000934780.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCCP14558 isolate sequencing     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2114860..2125285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ASL16_RS10720 (ASL16_10725) - 2114954..2115355 (-) 402 WP_063663523.1 hypothetical protein -
  ASL16_RS10725 (ASL16_10730) - 2115368..2115610 (-) 243 WP_063663525.1 SAV1978 family virulence-associated passenger protein -
  ASL16_RS10730 (ASL16_10735) - 2115614..2115982 (-) 369 WP_000101289.1 SA1788 family PVL leukocidin-associated protein -
  ASL16_RS10735 (ASL16_10740) - 2115995..2116399 (-) 405 WP_063663526.1 RusA family crossover junction endodeoxyribonuclease -
  ASL16_RS10740 (ASL16_10745) - 2116409..2116630 (-) 222 WP_001123684.1 DUF3269 family protein -
  ASL16_RS16235 (ASL16_10750) - 2116643..2116804 (-) 162 WP_000237153.1 hypothetical protein -
  ASL16_RS10750 (ASL16_10755) - 2116798..2117577 (-) 780 WP_063663528.1 ATP-binding protein -
  ASL16_RS10755 (ASL16_10760) - 2117587..2118357 (-) 771 WP_000190224.1 conserved phage C-terminal domain-containing protein -
  ASL16_RS10760 (ASL16_10765) - 2118403..2119062 (+) 660 WP_016028252.1 hypothetical protein -
  ASL16_RS10765 (ASL16_10770) - 2119172..2119846 (-) 675 WP_063663530.1 putative HNHc nuclease -
  ASL16_RS10770 (ASL16_10775) ssbA 2119860..2120285 (-) 426 WP_000934780.1 single-stranded DNA-binding protein Machinery gene
  ASL16_RS10775 (ASL16_10780) - 2120285..2120923 (-) 639 WP_001043065.1 ERF family protein -
  ASL16_RS10780 (ASL16_10785) - 2120923..2121403 (-) 481 Protein_2055 siphovirus Gp157 family protein -
  ASL16_RS10785 (ASL16_10790) - 2121418..2121678 (-) 261 WP_000291092.1 DUF1108 family protein -
  ASL16_RS10790 (ASL16_10795) - 2121775..2121936 (-) 162 WP_063663534.1 DUF1270 family protein -
  ASL16_RS10795 (ASL16_10800) - 2121929..2122150 (-) 222 WP_063663537.1 hypothetical protein -
  ASL16_RS10800 (ASL16_10805) - 2122221..2122874 (+) 654 WP_015978329.1 hypothetical protein -
  ASL16_RS10805 (ASL16_10810) - 2122884..2123027 (-) 144 WP_063663540.1 hypothetical protein -
  ASL16_RS10810 (ASL16_10815) - 2123058..2123255 (-) 198 WP_001148861.1 hypothetical protein -
  ASL16_RS10815 (ASL16_10820) - 2123272..2124060 (-) 789 WP_001148566.1 phage antirepressor -
  ASL16_RS10820 (ASL16_10825) - 2124076..2124330 (-) 255 WP_001106626.1 helix-turn-helix domain-containing protein -
  ASL16_RS10825 (ASL16_10830) - 2124520..2125158 (+) 639 WP_000874708.1 S24 family peptidase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15847.32 Da        Isoelectric Point: 4.6952

>NTDB_id=166584 ASL16_RS10770 WP_000934780.1 2119860..2120285(-) (ssbA) [Staphylococcus aureus strain NCCP14558 isolate sequencing]
MLNRTVLVGRLTKDPEYRTAPNGVSVTTFTIAVNRTFTNAQGEREADFINCVTFRKQAENVNNYLSKGSLAGVDGRLQSR
SYENKVGQRVFVTEVVADSVQFLEPKNSNQQQNDNYQQQGQAQTGNNPFDNTEEDFSDLPF

Nucleotide


Download         Length: 426 bp        

>NTDB_id=166584 ASL16_RS10770 WP_000934780.1 2119860..2120285(-) (ssbA) [Staphylococcus aureus strain NCCP14558 isolate sequencing]
ATGTTAAACAGAACAGTATTAGTAGGACGCTTAACAAAAGATCCAGAATATAGAACAGCGCCAAATGGTGTGAGTGTTAC
CACTTTCACTATCGCAGTTAACAGAACATTTACTAACGCTCAAGGAGAACGTGAGGCAGACTTTATTAACTGTGTAACTT
TTAGAAAACAAGCAGAAAATGTAAATAATTATTTATCCAAAGGGTCATTGGCTGGCGTTGATGGACGTTTACAATCACGC
AGTTATGAAAACAAAGTCGGGCAACGTGTGTTTGTTACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAGCAACCAACAACAAAATGACAATTATCAACAACAAGGACAAGCTCAAACTGGTAATAATCCGTTTGACAATACTGAAG
AAGATTTTTCAGACCTCCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

80.374

75.887

0.61
  ssb Latilactobacillus sakei subsp. sakei 23K

52.632

100

0.567
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

75.177

0.433
  ssbB/cilA Streptococcus mitis NCTC 12261

44.068

83.688

0.369
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.068

83.688

0.369
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.217

81.56

0.369
  ssbA Streptococcus mutans UA159

44.348

81.56

0.362
  ssbB/cilA Streptococcus mitis SK321

43.22

83.688

0.362
  ssbB/cilA Streptococcus pneumoniae Rx1

43.22

83.688

0.362
  ssbB/cilA Streptococcus pneumoniae D39

43.22

83.688

0.362
  ssbB/cilA Streptococcus pneumoniae R6

43.22

83.688

0.362

Multiple sequence alignment