Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   AUC44_RS05100 Genome accession   NZ_CP013910
Coordinates   1055099..1055455 (-) Length   118 a.a.
NCBI ID   WP_231724536.1    Uniprot ID   -
Organism   Deinococcus actinosclerus strain BM2     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1050099..1060455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AUC44_RS05080 (AUC44_05065) - 1050185..1050646 (+) 462 WP_062157676.1 NUDIX domain-containing protein -
  AUC44_RS05085 (AUC44_05070) - 1050754..1051239 (+) 486 WP_062157677.1 MarR family winged helix-turn-helix transcriptional regulator -
  AUC44_RS05090 (AUC44_05075) - 1051236..1052855 (+) 1620 WP_062157678.1 MDR family MFS transporter -
  AUC44_RS05095 (AUC44_05080) comEC 1052913..1055051 (-) 2139 WP_082688953.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AUC44_RS05100 (AUC44_05085) comEA 1055099..1055455 (-) 357 WP_231724536.1 ComEA family DNA-binding protein Machinery gene
  AUC44_RS05105 (AUC44_05090) rpmH 1055795..1055938 (+) 144 WP_046844501.1 50S ribosomal protein L34 -
  AUC44_RS05110 (AUC44_05095) rnpA 1056012..1056491 (+) 480 WP_062157680.1 ribonuclease P protein component -
  AUC44_RS05115 (AUC44_05100) yidD 1056509..1056742 (+) 234 WP_062159690.1 membrane protein insertion efficiency factor YidD -
  AUC44_RS05120 (AUC44_05105) yidC 1056739..1058331 (+) 1593 WP_062157681.1 YidC/Oxa1 family membrane protein insertase -
  AUC44_RS05125 (AUC44_05110) - 1058393..1058719 (-) 327 WP_157445172.1 hypothetical protein -
  AUC44_RS05130 (AUC44_05115) - 1058842..1059315 (-) 474 WP_062157683.1 heme-binding domain-containing protein -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 11995.08 Da        Isoelectric Point: 11.4752

>NTDB_id=165977 AUC44_RS05100 WP_231724536.1 1055099..1055455(-) (comEA) [Deinococcus actinosclerus strain BM2]
MLLAAAFTLGPALFPQPRVPTVTRAALTAATSPVATTPVATTPQAPVYPTTTSVTPLISGRVNLNSASLEQLEALPKVGP
ALAARIVAGRPYRSLADLDRVKGVGPAALKALGPLVSF

Nucleotide


Download         Length: 357 bp        

>NTDB_id=165977 AUC44_RS05100 WP_231724536.1 1055099..1055455(-) (comEA) [Deinococcus actinosclerus strain BM2]
GTGCTGCTCGCGGCGGCCTTCACCCTGGGGCCCGCCCTGTTCCCGCAGCCGCGCGTGCCGACCGTGACCCGCGCCGCGCT
GACCGCCGCGACCTCGCCTGTCGCCACTACGCCTGTCGCCACCACGCCGCAGGCGCCGGTCTATCCCACCACGACCAGCG
TCACGCCGCTGATCTCGGGCCGGGTGAACCTGAACTCGGCCAGCCTGGAGCAGCTCGAGGCCCTGCCGAAGGTGGGCCCG
GCGCTGGCGGCGCGGATCGTGGCGGGCCGGCCCTACCGCTCGCTGGCGGATCTGGACCGCGTGAAGGGCGTCGGGCCGGC
GGCGCTGAAGGCCCTGGGGCCGCTGGTGTCGTTCTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(61-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.248

99.153

0.627

Multiple sequence alignment