Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   AUC44_RS04545 Genome accession   NZ_CP013910
Coordinates   942610..943215 (-) Length   201 a.a.
NCBI ID   WP_062157583.1    Uniprot ID   -
Organism   Deinococcus actinosclerus strain BM2     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 937610..948215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AUC44_RS04520 (AUC44_04505) - 937630..938640 (-) 1011 WP_062157579.1 YkoP family protein -
  AUC44_RS04525 (AUC44_04510) - 938834..940015 (+) 1182 WP_062157580.1 glycosyltransferase -
  AUC44_RS04530 (AUC44_04515) - 939975..940649 (-) 675 WP_062157581.1 glycosyltransferase -
  AUC44_RS04535 (AUC44_04520) - 940703..941905 (+) 1203 WP_231724528.1 MFS transporter -
  AUC44_RS04540 (AUC44_04525) - 941889..942605 (+) 717 WP_062157582.1 polysaccharide deacetylase family protein -
  AUC44_RS04545 (AUC44_04530) recR 942610..943215 (-) 606 WP_062157583.1 recombination mediator RecR Machinery gene
  AUC44_RS04550 (AUC44_04535) - 943339..943629 (-) 291 WP_062157584.1 YbaB/EbfC family nucleoid-associated protein -
  AUC44_RS04555 (AUC44_04540) - 943760..944245 (-) 486 WP_062157585.1 peroxiredoxin -
  AUC44_RS04560 (AUC44_04545) - 944319..944534 (-) 216 WP_062157586.1 hypothetical protein -
  AUC44_RS04565 (AUC44_04550) - 944657..945334 (-) 678 WP_062157587.1 NUDIX hydrolase -
  AUC44_RS04570 (AUC44_04555) - 945460..947463 (-) 2004 WP_062157588.1 amylo-alpha-1,6-glucosidase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21953.29 Da        Isoelectric Point: 6.3353

>NTDB_id=165975 AUC44_RS04545 WP_062157583.1 942610..943215(-) (recR) [Deinococcus actinosclerus strain BM2]
MKYPPSLVALIRELSRLPGIGPKSAQRLAFHLFEQPREDIERLSRALLEAKRDLHTCPVCFNITDAERCDVCSDPSRDQG
VICVVEEPGDVIAIERSGEYRGLYHVLHGVLSPMNGVGPDKLHIRPLLPRVQEGQEIILATGTTVEGDATALYLQRLLEP
LGAVVSRIAYGLPVGGALEYADEVTLGRALAGRQRVSKPQG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=165975 AUC44_RS04545 WP_062157583.1 942610..943215(-) (recR) [Deinococcus actinosclerus strain BM2]
GTGAAGTACCCTCCATCGTTGGTGGCGCTCATCCGTGAGCTGTCGCGCCTGCCCGGGATTGGGCCCAAAAGCGCGCAGCG
GCTGGCGTTCCACCTGTTCGAGCAGCCGCGGGAGGACATCGAGCGCCTGTCGCGCGCGCTGCTGGAAGCCAAGCGTGACC
TGCATACCTGCCCGGTGTGCTTCAACATCACGGACGCCGAGCGCTGCGACGTGTGCAGCGACCCCAGCCGCGACCAGGGC
GTGATCTGCGTCGTGGAGGAACCCGGGGACGTGATCGCCATCGAGCGCAGCGGCGAGTACCGCGGCCTGTACCACGTGCT
GCACGGCGTGCTGAGTCCCATGAACGGGGTGGGGCCCGACAAGCTGCACATCCGCCCGCTGCTGCCGCGCGTGCAGGAGG
GCCAGGAGATCATCCTGGCGACCGGCACGACCGTGGAGGGCGACGCGACCGCGCTGTACCTCCAGCGGCTGCTCGAACCC
CTGGGCGCGGTCGTGAGCCGCATCGCGTACGGCCTGCCGGTGGGCGGGGCGCTGGAATACGCGGACGAGGTGACGCTGGG
GCGCGCGCTGGCCGGCCGCCAGCGCGTCAGCAAACCGCAGGGCTGA

Domains

Predicted by InterproScan.

Toprim domain (Toprim_4)

(81-169)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

89

99.502

0.886

Multiple sequence alignment