Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AU077_RS09115 Genome accession   NZ_CP013688
Coordinates   1834926..1835321 (-) Length   131 a.a.
NCBI ID   WP_058621954.1    Uniprot ID   -
Organism   Streptococcus gallolyticus strain ICDDRB-NRC-S1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1829926..1840321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AU077_RS09090 (AU077_09090) - 1830134..1831459 (-) 1326 WP_420476224.1 sensor histidine kinase -
  AU077_RS09095 (AU077_09095) - 1831450..1832415 (-) 966 WP_058621951.1 sugar ABC transporter substrate-binding protein -
  AU077_RS09100 (AU077_09100) - 1832569..1833375 (-) 807 WP_058621952.1 Cof-type HAD-IIB family hydrolase -
  AU077_RS09105 (AU077_09105) - 1833503..1833730 (-) 228 WP_014293788.1 sulfurtransferase TusA family protein -
  AU077_RS09110 (AU077_09110) - 1833733..1834776 (-) 1044 WP_058621953.1 YeeE/YedE family protein -
  AU077_RS09115 (AU077_09115) ssbA 1834926..1835321 (-) 396 WP_058621954.1 single-stranded DNA-binding protein Machinery gene
  AU077_RS12200 - 1835439..1835660 (+) 222 Protein_1852 IS3 family transposase -
  AU077_RS09120 (AU077_09120) ytpR 1835752..1836378 (-) 627 WP_014293785.1 YtpR family tRNA-binding protein -
  AU077_RS09125 (AU077_09125) - 1836387..1836704 (-) 318 WP_009853246.1 thioredoxin family protein -
  AU077_RS09130 (AU077_09130) - 1836697..1836990 (-) 294 WP_039670370.1 DUF4651 domain-containing protein -
  AU077_RS09135 (AU077_09135) pepA 1837108..1838175 (+) 1068 WP_058621955.1 glutamyl aminopeptidase -
  AU077_RS09140 (AU077_09140) proC 1838236..1839006 (+) 771 WP_014293782.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14965.93 Da        Isoelectric Point: 5.2909

>NTDB_id=164070 AU077_RS09115 WP_058621954.1 1834926..1835321(-) (ssbA) [Streptococcus gallolyticus strain ICDDRB-NRC-S1]
MYNKVIMIGRLTAQPELVTTSNEKSVTRVTLAVNRRFKSQNGERETDFISVVVWGRLAETLVSYAGKGSLISIDGELRTR
KYEKDGHTNYVTEVLCHSFQLLESRAQRDMRENNVANDLAELVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=164070 AU077_RS09115 WP_058621954.1 1834926..1835321(-) (ssbA) [Streptococcus gallolyticus strain ICDDRB-NRC-S1]
ATGTACAATAAAGTTATTATGATTGGTCGTTTGACAGCGCAGCCTGAGCTTGTGACGACTTCAAATGAGAAATCTGTTAC
ACGTGTAACACTAGCAGTCAACCGCCGTTTTAAATCGCAAAATGGTGAGCGTGAGACTGATTTTATTTCAGTTGTGGTTT
GGGGACGTTTGGCAGAAACTCTTGTTTCTTATGCTGGAAAAGGAAGTCTGATTTCGATTGATGGCGAGCTTCGCACACGT
AAATATGAAAAAGATGGTCACACGAATTATGTGACAGAAGTGCTTTGCCATTCTTTCCAACTTTTAGAAAGCCGTGCCCA
ACGTGACATGCGAGAAAATAATGTGGCAAACGACCTCGCTGAATTAGTTTTGGAAGAGGAAGAATTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

78.626

100

0.786
  ssbB/cilA Streptococcus pneumoniae R6

75.573

100

0.756
  ssbB/cilA Streptococcus pneumoniae Rx1

75.573

100

0.756
  ssbB/cilA Streptococcus pneumoniae D39

75.573

100

0.756
  ssbB/cilA Streptococcus pneumoniae TIGR4

74.809

100

0.748
  ssbB Streptococcus sobrinus strain NIDR 6715-7

74.809

100

0.748
  ssbB/cilA Streptococcus mitis NCTC 12261

74.046

100

0.74
  ssbB/cilA Streptococcus mitis SK321

74.046

100

0.74
  ssbB Lactococcus lactis subsp. cremoris KW2

60.526

87.023

0.527
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

80.916

0.405
  ssb Latilactobacillus sakei subsp. sakei 23K

44.444

89.313

0.397

Multiple sequence alignment