Detailed information NTG0161084

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: NPD5_RS19200
• Genome accession: NZ_CP013243
• Coordinates: 4014344..4014790 (+)
• Length: 148 a.a.
• NCBI ID: WP_045896601.1
• Uniprot ID: A0A1J1CRC5
• Organism: Clostridium sporogenes strain CDC_1632
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 4009344..4019790

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NPD5_RS19170 (NPD5_3801)	-	4009708..4010298 (-)	591	WP_045896618.1	HD-GYP domain-containing protein	-
NPD5_RS19175 (NPD5_3802)	-	4010430..4010885 (+)	456	WP_072586993.1	prepilin peptidase	-
NPD5_RS21850 (NPD5_3803)	-	4010975..4011115 (+)	141	WP_003401881.1	hypothetical protein	-
NPD5_RS19180 (NPD5_3804)	-	4011137..4011529 (+)	393	WP_072586994.1	LemA family protein	-
NPD5_RS19185 (NPD5_3805)	-	4011555..4011740 (-)	186	WP_045896596.1	hypothetical protein	-
NPD5_RS19190 (NPD5_3806)	-	4011821..4012849 (+)	1029	WP_072586995.1	NlpC/P60 family protein	-
NPD5_RS19195 (NPD5_3807)	-	4013008..4014150 (+)	1143	WP_003362366.1	RNA-guided endonuclease InsQ/TnpB family protein	-
NPD5_RS19200 (NPD5_3808)	ssbA	4014344..4014790 (+)	447	WP_045896601.1	single-stranded DNA-binding protein	Machinery gene
NPD5_RS19205 (NPD5_3809)	-	4014926..4015159 (+)	234	WP_072586996.1	hypothetical protein	-
NPD5_RS19210 (NPD5_3810)	-	4015178..4015822 (+)	645	WP_072586997.1	hypothetical protein	-
NPD5_RS19215 (NPD5_3811)	-	4015876..4016346 (-)	471	WP_072586998.1	5'-nucleotidase	-
NPD5_RS19220 (NPD5_3812)	-	4016706..4016933 (+)	228	WP_045897182.1	hypothetical protein	-
NPD5_RS19225 (NPD5_3814)	-	4017405..4017686 (-)	282	WP_045897185.1	hypothetical protein	-
NPD5_RS19230 (NPD5_3815)	-	4019026..4019235 (-)	210	WP_236905571.1	hypothetical protein	-

Sequence

Protein

• Length: 148 a.a.
• Molecular weight: 16445.26 Da
• Isoelectric Point: 4.8013

>NTDB_id=161084 NPD5_RS19200 WP_045896601.1 4014344..4014790(+) (ssbA) [Clostridium sporogenes strain CDC_1632]
MNKVVLIGRLTKDPELKFTPGNGTAVANFTLAVDRRFSKDGQREADFIPIVVWGKQAESTANYMSKGKLMGVSGRIQTRS
YEAKDGTKRYITEVIAEEVKFLEWGDKATTDSSYNNRSESSYQSGQNFANGNSFDDDIIPVDDGDIPF

Nucleotide

• Length: 447 bp

>NTDB_id=161084 NPD5_RS19200 WP_045896601.1 4014344..4014790(+) (ssbA) [Clostridium sporogenes strain CDC_1632]
ATGAATAAAGTTGTTTTAATAGGTAGACTAACCAAAGATCCTGAATTAAAATTTACTCCAGGAAATGGAACAGCGGTTGC
TAATTTCACTTTGGCTGTAGATAGAAGATTTTCAAAGGATGGTCAGAGAGAAGCAGATTTCATTCCTATAGTAGTATGGG
GAAAACAAGCAGAATCTACAGCTAACTATATGAGTAAAGGAAAACTTATGGGGGTTAGTGGTAGAATACAAACAAGAAGC
TATGAAGCTAAAGATGGTACAAAAAGATATATAACAGAAGTAATAGCTGAAGAAGTTAAATTTCTTGAGTGGGGAGATAA
AGCTACCACAGATTCATCATATAATAATAGATCAGAATCAAGTTACCAATCAGGACAAAATTTTGCAAATGGAAACAGTT
TTGACGATGATATAATTCCAGTAGATGATGGAGACATACCTTTTTAG

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (1-102)

3D structure

• AlphaFold DB: A0A1J1CRC5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	46.512	100	0.541
ssb	Latilactobacillus sakei subsp. sakei 23K	41.216	100	0.412
ssbB/cilA	Streptococcus mitis NCTC 12261	39.189	100	0.392
ssbB/cilA	Streptococcus pneumoniae TIGR4	38.514	100	0.385
ssbB/cilA	Streptococcus pneumoniae Rx1	37.838	100	0.378
ssbB/cilA	Streptococcus pneumoniae D39	37.838	100	0.378
ssbB/cilA	Streptococcus pneumoniae R6	37.838	100	0.378
ssbB/cilA	Streptococcus mitis SK321	37.838	100	0.378
ssbB	Bacillus subtilis subsp. subtilis str. 168	54.369	69.595	0.378
ssbB	Streptococcus sobrinus strain NIDR 6715-7	52.427	69.595	0.365