Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CPter291_RS22245 Genome accession   NZ_CP013236
Coordinates   4970823..4972043 (+) Length   406 a.a.
NCBI ID   WP_062119198.1    Uniprot ID   -
Organism   Collimonas pratensis strain Ter291     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4965823..4977043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPter291_RS22225 (CPter291_4700) ispB 4966223..4967173 (+) 951 WP_156480244.1 octaprenyl diphosphate synthase -
  CPter291_RS22235 (CPter291_4702) - 4967516..4968796 (+) 1281 WP_062119193.1 HlyC/CorC family transporter -
  CPter291_RS22240 (CPter291_4704) pilB 4969086..4970807 (+) 1722 WP_062119196.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CPter291_RS22245 (CPter291_4705) pilC 4970823..4972043 (+) 1221 WP_062119198.1 type II secretion system F family protein Machinery gene
  CPter291_RS22250 (CPter291_4706) pilD 4972043..4972909 (+) 867 WP_062119201.1 prepilin peptidase Machinery gene
  CPter291_RS22255 (CPter291_4707) coaE 4972916..4973569 (+) 654 WP_062119204.1 dephospho-CoA kinase -
  CPter291_RS22260 (CPter291_4708) zapD 4973692..4974447 (+) 756 WP_061944425.1 cell division protein ZapD -
  CPter291_RS22265 (CPter291_4709) yacG 4974470..4974658 (+) 189 WP_061944428.1 DNA gyrase inhibitor YacG -
  CPter291_RS22270 (CPter291_4710) mutT 4974688..4975104 (-) 417 WP_062119207.1 8-oxo-dGTP diphosphatase MutT -
  CPter291_RS22275 (CPter291_4711) - 4975116..4975994 (-) 879 WP_062119210.1 ATP-binding protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44401.39 Da        Isoelectric Point: 10.1425

>NTDB_id=160952 CPter291_RS22245 WP_062119198.1 4970823..4972043(+) (pilC) [Collimonas pratensis strain Ter291]
MATAASSRQVKELVYLWEGKDKKGKVVRGELRAGSETVVNVTMRRQGILVTKVKKKTFRSGKKISEKDIGLFTRQLATMM
KAGVPLLQSFDIVAKGHANPSVSKLVNDIRGDVETGTSLSQAFRKFPLYFDPLFCNLVGAGEQAGILEDLLERLAIYKEK
TLAIKSKIKSALFYPISILAVAFVVTAVIMIWVVPAFKQVFSSFGANLPAPTLFVMAISDFMVGNWYIIFPTIFAGLYLF
FQSWRRSLKVQRFMDRLLLKAPIFGEVIRKATIARWTRTLATMFAAGVPLVESLDSVGGASGNAVYLDATKKIQSEVSTG
TSLTTAMENANVFPNMVTQMVSIGEESGSLDQMLGKVADFYEAEVDDAVASLSSLMEPLIMVILGVLIGGLVIAMYLPIF
KLGSVV

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=160952 CPter291_RS22245 WP_062119198.1 4970823..4972043(+) (pilC) [Collimonas pratensis strain Ter291]
ATGGCAACAGCGGCAAGCTCACGTCAGGTCAAGGAGTTGGTTTATCTTTGGGAAGGCAAGGATAAAAAGGGCAAGGTTGT
ACGCGGTGAACTGCGTGCGGGCAGCGAGACCGTGGTCAATGTCACCATGCGCCGGCAAGGAATTCTGGTTACCAAAGTCA
AAAAGAAGACCTTCCGCAGCGGGAAGAAAATCTCAGAGAAGGATATTGGGCTGTTCACCCGCCAATTGGCAACCATGATG
AAAGCCGGCGTACCACTGCTGCAGTCCTTCGACATTGTAGCTAAAGGCCACGCCAATCCATCGGTCTCGAAACTAGTGAA
TGATATTCGCGGCGATGTTGAGACAGGCACAAGCTTGAGCCAGGCTTTCCGCAAGTTCCCACTCTATTTCGACCCGCTAT
TCTGCAATCTGGTCGGCGCCGGCGAGCAGGCGGGTATCCTGGAAGACTTGTTGGAACGGCTGGCAATCTACAAGGAAAAG
ACTCTCGCGATTAAAAGCAAGATCAAATCGGCCTTGTTTTATCCGATTTCAATTTTGGCAGTGGCATTTGTCGTTACCGC
AGTCATCATGATCTGGGTCGTGCCGGCGTTCAAGCAGGTGTTCTCAAGTTTCGGCGCGAACTTGCCGGCGCCGACCCTTT
TCGTCATGGCGATCTCGGATTTCATGGTGGGCAACTGGTACATTATTTTCCCCACGATATTTGCCGGCCTGTATCTGTTC
TTCCAATCCTGGAGACGTTCGCTCAAAGTACAACGATTCATGGATCGATTATTGCTGAAGGCGCCAATCTTCGGCGAGGT
CATACGCAAAGCCACGATTGCCCGCTGGACCCGTACTTTGGCGACCATGTTCGCCGCCGGCGTGCCTTTGGTCGAGTCGC
TCGACTCGGTCGGCGGCGCATCCGGCAACGCTGTGTATCTGGATGCCACCAAGAAAATCCAGAGCGAAGTGAGTACCGGC
ACCAGCTTGACTACTGCAATGGAAAACGCCAACGTGTTCCCGAATATGGTGACGCAGATGGTTTCCATTGGCGAAGAATC
GGGTTCGCTGGACCAGATGCTGGGCAAGGTCGCCGATTTCTATGAAGCAGAAGTCGACGATGCCGTCGCCTCGCTGTCCA
GCCTGATGGAGCCTTTGATCATGGTGATCCTCGGCGTCCTGATCGGCGGCCTGGTGATTGCCATGTACTTGCCTATTTTC
AAACTGGGCTCGGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.218

99.507

0.53
  pilC Acinetobacter baylyi ADP1

51.716

100

0.52
  pilG Neisseria gonorrhoeae MS11

52.764

98.03

0.517
  pilG Neisseria meningitidis 44/76-A

52.513

98.03

0.515
  pilC Legionella pneumophila strain ERS1305867

52.513

98.03

0.515
  pilC Acinetobacter baumannii D1279779

52.645

97.783

0.515
  pilC Vibrio cholerae strain A1552

40.806

97.783

0.399
  pilC Vibrio campbellii strain DS40M4

40.554

97.783

0.397
  pilC Thermus thermophilus HB27

36.145

100

0.369

Multiple sequence alignment