Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   FORC41_RS09885 Genome accession   NZ_CP016628
Coordinates   1915765..1917192 (-) Length   475 a.a.
NCBI ID   WP_077786780.1    Uniprot ID   -
Organism   Escherichia coli strain FORC_041     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1910765..1922192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC41_RS09860 (FORC41_1814) yeeZ 1910820..1911644 (+) 825 WP_000754758.1 SDR family oxidoreductase -
  FORC41_RS09865 (FORC41_1815) yeeY 1911690..1912619 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  FORC41_RS26135 yoeI 1912834..1912896 (+) 63 WP_010723108.1 membrane protein YoeI -
  FORC41_RS09870 (FORC41_1816) plaP 1912886..1914244 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  FORC41_RS09875 (FORC41_1817) tsuA 1914423..1915481 (+) 1059 WP_024187793.1 thiosulfate utilization transporter TsuA/YeeE -
  FORC41_RS09880 (FORC41_1818) tsuB 1915495..1915722 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  FORC41_RS09885 (FORC41_1819) sbcB 1915765..1917192 (-) 1428 WP_077786780.1 exodeoxyribonuclease I Machinery gene
  FORC41_RS09890 (FORC41_1820) dacD 1917401..1918567 (+) 1167 WP_000830169.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  FORC41_RS09895 (FORC41_1821) sbmC 1918686..1919159 (+) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  FORC41_RS09900 (FORC41_1822) yeeA 1919357..1920415 (+) 1059 WP_001200891.1 FUSC family protein -
  FORC41_RS09905 (FORC41_1823) tmaR 1920587..1920916 (+) 330 WP_000450409.1 DUF496 family protein -
  FORC41_RS09910 (FORC41_1824) - 1921017..1921313 (-) 297 Protein_1811 EutP/PduV family microcompartment system protein -
  FORC41_RS09915 - 1921292..1921651 (+) 360 WP_000543549.1 hypothetical protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54520.80 Da        Isoelectric Point: 5.4700

>NTDB_id=160953 FORC41_RS09885 WP_077786780.1 1915765..1917192(-) (sbcB) [Escherichia coli strain FORC_041]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDFLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVVIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=160953 FORC41_RS09885 WP_077786780.1 1915765..1917192(-) (sbcB) [Escherichia coli strain FORC_041]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTCTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAACATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCTACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGTGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTCGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581

Multiple sequence alignment