Detailed information NTG0160953

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: CPter291_RS22250
• Genome accession: NZ_CP013236
• Coordinates: 4972043..4972909 (+)
• Length: 288 a.a.
• NCBI ID: WP_062119201.1
• Uniprot ID: -
• Organism: Collimonas pratensis strain Ter291
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4967043..4977909

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CPter291_RS22235 (CPter291_4702)	-	4967516..4968796 (+)	1281	WP_062119193.1	HlyC/CorC family transporter	-
CPter291_RS22240 (CPter291_4704)	pilB	4969086..4970807 (+)	1722	WP_062119196.1	type IV-A pilus assembly ATPase PilB	Machinery gene
CPter291_RS22245 (CPter291_4705)	pilC	4970823..4972043 (+)	1221	WP_062119198.1	type II secretion system F family protein	Machinery gene
CPter291_RS22250 (CPter291_4706)	pilD	4972043..4972909 (+)	867	WP_062119201.1	prepilin peptidase	Machinery gene
CPter291_RS22255 (CPter291_4707)	coaE	4972916..4973569 (+)	654	WP_062119204.1	dephospho-CoA kinase	-
CPter291_RS22260 (CPter291_4708)	zapD	4973692..4974447 (+)	756	WP_061944425.1	cell division protein ZapD	-
CPter291_RS22265 (CPter291_4709)	yacG	4974470..4974658 (+)	189	WP_061944428.1	DNA gyrase inhibitor YacG	-
CPter291_RS22270 (CPter291_4710)	mutT	4974688..4975104 (-)	417	WP_062119207.1	8-oxo-dGTP diphosphatase MutT	-
CPter291_RS22275 (CPter291_4711)	-	4975116..4975994 (-)	879	WP_062119210.1	ATP-binding protein	-
CPter291_RS22280 (CPter291_4712)	argJ	4976158..4977396 (-)	1239	WP_062119212.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31167.11 Da
• Isoelectric Point: 7.7375

>NTDB_id=160953 CPter291_RS22250 WP_062119201.1 4972043..4972909(+) (pilD) [Collimonas pratensis strain Ter291]
MQEGIFFLAAGSLLPTAIAAIFGLLIGSFLNVVIHRLPIMMQRESDNYVAHESGQPLPHTDRYNLVVPRSACPQCKHQIG
ALENVPVLSYLALRGKCASCKTPISARYPIVEAFTGALSALLIWHFGSGWAGLATLVFAYLLIAMTFIDADTQLLPDDLT
LPLLWLGLLLNISGLFAPLSEAVIGAAAGYLSLWLIYWAFKLLTGKEGMGYGDFKLLAALGAWLGWKMLPIIILFSSLVG
AVVGLVLIIVARRGRDIPIPFGPYLAAAGLLALLYGRTIMETYFNFVA

Nucleotide

• Length: 867 bp

>NTDB_id=160953 CPter291_RS22250 WP_062119201.1 4972043..4972909(+) (pilD) [Collimonas pratensis strain Ter291]
ATGCAAGAAGGTATTTTTTTCCTGGCGGCGGGGAGCCTGCTTCCCACCGCCATCGCCGCTATTTTTGGCTTACTCATCGG
TAGTTTCCTCAACGTCGTGATTCATCGGCTGCCGATCATGATGCAGCGCGAATCGGATAACTACGTTGCTCACGAAAGCG
GCCAGCCGCTGCCGCATACCGACCGCTACAACCTGGTCGTGCCGCGCTCGGCGTGCCCGCAATGCAAGCACCAGATCGGG
GCTCTCGAAAACGTGCCGGTGCTGAGCTATCTGGCCTTGCGCGGCAAGTGCGCCTCCTGCAAGACACCGATTTCAGCGCG
CTATCCGATCGTGGAAGCATTTACCGGCGCCCTGTCGGCGCTGCTGATCTGGCATTTCGGCAGCGGCTGGGCCGGCCTGG
CGACGCTGGTCTTTGCCTACCTGCTGATCGCCATGACGTTTATCGATGCCGATACGCAGCTGCTGCCTGATGACCTGACC
CTCCCTTTGCTGTGGCTGGGTTTGCTCCTGAATATCTCTGGCCTATTTGCGCCGCTCAGCGAAGCGGTGATCGGTGCCGC
CGCCGGCTACCTGAGCCTGTGGCTGATCTACTGGGCATTCAAGCTGCTGACCGGCAAGGAAGGCATGGGCTACGGCGATT
TCAAGCTGCTGGCGGCGCTGGGCGCCTGGCTGGGCTGGAAAATGCTCCCTATTATCATCCTGTTTTCGTCGCTGGTCGGC
GCCGTGGTCGGCCTCGTCCTGATCATCGTTGCCCGCCGTGGACGCGACATTCCTATCCCATTCGGCCCTTATCTGGCAGC
GGCAGGCTTGCTCGCGTTGCTATATGGCCGCACTATCATGGAAACTTATTTCAATTTCGTTGCCTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.882	94.444	0.528
pilD	Vibrio campbellii strain DS40M4	52.768	94.097	0.497
pilD	Acinetobacter baumannii D1279779	47.203	99.306	0.469
pilD	Neisseria gonorrhoeae MS11	52.756	88.194	0.465
pilD	Acinetobacter nosocomialis M2	46.503	99.306	0.462