Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CAter10_RS18730 Genome accession   NZ_CP013233
Coordinates   4089581..4090816 (+) Length   411 a.a.
NCBI ID   WP_061534605.1    Uniprot ID   A0A127QNN6
Organism   Collimonas arenae strain Ter10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4084581..4095816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAter10_RS18710 (CAter10_4366) ispB 4085158..4086108 (+) 951 WP_128083221.1 octaprenyl diphosphate synthase -
  CAter10_RS18720 (CAter10_4368) - 4086394..4087680 (+) 1287 WP_061534603.1 HlyC/CorC family transporter -
  CAter10_RS18725 (CAter10_4369) pilB 4087806..4089530 (+) 1725 WP_061534604.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CAter10_RS18730 (CAter10_4370) pilC 4089581..4090816 (+) 1236 WP_061534605.1 type II secretion system F family protein Machinery gene
  CAter10_RS18735 (CAter10_4371) pilD 4090816..4091682 (+) 867 WP_061534606.1 prepilin peptidase Machinery gene
  CAter10_RS18740 (CAter10_4372) coaE 4091689..4092333 (+) 645 WP_061534607.1 dephospho-CoA kinase -
  CAter10_RS18745 (CAter10_4373) zapD 4092519..4093274 (+) 756 WP_061534608.1 cell division protein ZapD -
  CAter10_RS18750 (CAter10_4374) - 4093296..4093484 (+) 189 WP_061534609.1 DNA gyrase inhibitor YacG -
  CAter10_RS18755 (CAter10_4375) - 4093548..4093964 (-) 417 WP_061534610.1 NUDIX domain-containing protein -
  CAter10_RS18760 (CAter10_4376) - 4094056..4094946 (-) 891 WP_061535463.1 ATP-binding protein -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 44723.71 Da        Isoelectric Point: 10.0416

>NTDB_id=160889 CAter10_RS18730 WP_061534605.1 4089581..4090816(+) (pilC) [Collimonas arenae strain Ter10]
MATAAPRSASSARQVKEWVYLWEGKDKKGKAVRGELRAGSETVVTVTMRRQGILVTKIKKKTFRSGKKISDKDISLFTRQ
LATMMKAGVPLLQSFDIVAKGHANPSVSKLVNEIRGDVETGTSLSQAFRKYPLYFDPLFCNLVGAGEQAGILEDLLERLA
IYKEKTLAIKAKIKSAMFYPVSILAVAFIVTAVIMIWVVPAFKQVFSSFGADLPGPTLVVMAISDFVVANWYIIFGGLFA
ALYLFFQSWRRSLKVQRFMDQLLLKAPIFGPVIRKATIARWTRTLATMFAAGVPLVESLDSVGGAAGNAVYLDATKKIQS
EVSTGTSLTAAMENADVFPNMVTQMVSIGEESGSLDQMLGKVADFYEAEVDDAVASLSSLMEPLIMVILGVLIGGLVIAM
YLPIFKLGSVV

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=160889 CAter10_RS18730 WP_061534605.1 4089581..4090816(+) (pilC) [Collimonas arenae strain Ter10]
ATGGCAACTGCCGCACCACGCAGCGCCTCCAGCGCACGCCAAGTCAAAGAGTGGGTCTATCTTTGGGAAGGCAAGGATAA
AAAGGGCAAAGCCGTGCGCGGCGAATTGCGCGCGGGCAGCGAAACGGTGGTTACCGTCACGATGCGTCGCCAGGGTATCC
TGGTCACCAAGATCAAGAAAAAAACCTTCCGTAGCGGCAAGAAGATTTCCGACAAGGACATCTCGCTGTTTACGCGCCAG
TTGGCGACCATGATGAAGGCCGGCGTGCCATTGCTGCAATCGTTCGACATCGTGGCCAAGGGGCATGCCAATCCGTCTGT
CTCGAAGCTGGTCAATGAAATCCGCGGTGATGTCGAAACCGGAACCAGCCTCAGCCAGGCATTCCGCAAATATCCGTTAT
ATTTCGATCCATTGTTCTGCAACCTGGTCGGCGCCGGCGAACAAGCCGGTATTCTTGAAGATCTGCTGGAACGGCTGGCA
ATCTACAAGGAAAAAACCCTAGCCATCAAGGCCAAGATCAAGTCCGCCATGTTCTATCCAGTATCGATTCTGGCGGTGGC
ATTTATTGTTACCGCGGTCATCATGATTTGGGTGGTGCCTGCGTTCAAACAAGTATTCTCAAGCTTCGGCGCCGATTTGC
CCGGTCCGACGCTGGTGGTGATGGCTATCTCAGATTTCGTGGTTGCCAACTGGTACATCATCTTTGGCGGCCTATTTGCT
GCCCTTTACCTGTTCTTCCAGTCCTGGCGGCGCTCGCTCAAGGTGCAACGTTTCATGGACCAGTTGCTGCTAAAAGCGCC
GATTTTCGGCCCAGTCATCCGTAAAGCCACGATCGCCCGCTGGACTCGTACTCTGGCCACCATGTTTGCCGCCGGCGTGC
CTCTGGTTGAGTCACTGGACTCGGTTGGCGGCGCTGCCGGCAATGCGGTCTATCTGGACGCCACAAAAAAAATCCAGAGC
GAAGTCAGCACCGGCACCAGCCTGACTGCCGCCATGGAAAACGCTGATGTGTTCCCCAACATGGTGACGCAGATGGTATC
GATCGGCGAAGAATCCGGTTCGCTGGACCAGATGCTGGGCAAGGTTGCCGATTTCTATGAAGCCGAAGTTGACGATGCGG
TTGCATCGTTGTCGAGCCTGATGGAGCCGTTGATCATGGTGATCCTCGGCGTGCTGATCGGCGGCTTGGTGATCGCCATG
TATTTGCCAATTTTCAAACTGGGTTCGGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(77-200)

Type II secretion system (T2SS), protein F (T2SSF)

(281-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A127QNN6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.731

97.81

0.526
  pilG Neisseria gonorrhoeae MS11

53.401

96.594

0.516
  pilG Neisseria meningitidis 44/76-A

52.897

96.594

0.511
  pilC Acinetobacter baumannii D1279779

52.393

96.594

0.506
  pilC Legionella pneumophila strain ERS1305867

52.273

96.35

0.504
  pilC Acinetobacter baylyi ADP1

51.759

96.837

0.501
  pilC Vibrio campbellii strain DS40M4

40.144

100

0.406
  pilC Vibrio cholerae strain A1552

40.806

96.594

0.394
  pilC Thermus thermophilus HB27

37.845

97.08

0.367

Multiple sequence alignment