Detailed information NTG0160890

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: CAter10_RS18735
• Genome accession: NZ_CP013233
• Coordinates: 4090816..4091682 (+)
• Length: 288 a.a.
• NCBI ID: WP_061534606.1
• Uniprot ID: A0A127QNI9
• Organism: Collimonas arenae strain Ter10
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4085816..4096682

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CAter10_RS18720 (CAter10_4368)	-	4086394..4087680 (+)	1287	WP_061534603.1	HlyC/CorC family transporter	-
CAter10_RS18725 (CAter10_4369)	pilB	4087806..4089530 (+)	1725	WP_061534604.1	type IV-A pilus assembly ATPase PilB	Machinery gene
CAter10_RS18730 (CAter10_4370)	pilC	4089581..4090816 (+)	1236	WP_061534605.1	type II secretion system F family protein	Machinery gene
CAter10_RS18735 (CAter10_4371)	pilD	4090816..4091682 (+)	867	WP_061534606.1	prepilin peptidase	Machinery gene
CAter10_RS18740 (CAter10_4372)	coaE	4091689..4092333 (+)	645	WP_061534607.1	dephospho-CoA kinase	-
CAter10_RS18745 (CAter10_4373)	zapD	4092519..4093274 (+)	756	WP_061534608.1	cell division protein ZapD	-
CAter10_RS18750 (CAter10_4374)	-	4093296..4093484 (+)	189	WP_061534609.1	DNA gyrase inhibitor YacG	-
CAter10_RS18755 (CAter10_4375)	-	4093548..4093964 (-)	417	WP_061534610.1	NUDIX domain-containing protein	-
CAter10_RS18760 (CAter10_4376)	-	4094056..4094946 (-)	891	WP_061535463.1	ATP-binding protein	-
CAter10_RS18765 (CAter10_4377)	argJ	4095131..4096369 (-)	1239	WP_061534611.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31403.37 Da
• Isoelectric Point: 7.7783

>NTDB_id=160890 CAter10_RS18735 WP_061534606.1 4090816..4091682(+) (pilD) [Collimonas arenae strain Ter10]
MQDGIFFLAAGSLLPTVMAAIFGLLVGSFLNVVIHRLPIMMQRESDNYVAHESGQPLPHTDRYNLLVPRSACPQCKHQIG
ALENVPVFSYLALRGKCRACKTPISARYPIVETLTGALSALLIWHFGSGWSGLASLVFLYLLIAMTFIDADTQLLPDDLT
LPLLWIGLLLNLSGLFVPLNEAVIGAAAGYLALWSIYWIFKLLTGKEGMGYGDFKLLAALGAWMGWKMLPIIILFSSLVG
AAVGLALIIFFRHGRDKPIPFGPYLAAAGLLALLYGHTIMETYFGFVA

Nucleotide

• Length: 867 bp

>NTDB_id=160890 CAter10_RS18735 WP_061534606.1 4090816..4091682(+) (pilD) [Collimonas arenae strain Ter10]
ATGCAAGATGGGATTTTTTTCCTGGCGGCGGGAAGCTTGCTTCCCACCGTCATGGCAGCAATTTTTGGCTTATTGGTCGG
CAGTTTCCTGAATGTGGTGATTCACCGGCTGCCGATCATGATGCAACGCGAGTCGGACAATTATGTTGCCCACGAAAGCG
GACAACCGCTGCCACATACGGATCGCTACAACCTGCTGGTGCCGCGTTCGGCCTGCCCGCAATGCAAACACCAGATCGGT
GCGTTGGAGAATGTGCCGGTCTTTAGCTATCTGGCGCTGCGCGGCAAGTGCCGGGCCTGCAAGACTCCGATCTCGGCGCG
CTATCCAATTGTCGAGACACTGACCGGCGCCCTGTCTGCACTGCTGATCTGGCACTTTGGCAGCGGCTGGAGCGGCCTGG
CGTCCCTGGTCTTTCTCTATCTGCTGATCGCCATGACGTTCATCGACGCCGATACGCAACTGCTCCCAGACGACCTGACA
TTGCCCTTGCTTTGGATCGGCCTGTTGCTCAACCTGTCAGGACTGTTCGTGCCACTGAACGAAGCCGTGATTGGCGCTGC
TGCCGGCTACTTGGCGTTATGGTCAATCTATTGGATATTCAAGCTGCTGACCGGCAAGGAAGGCATGGGATACGGAGACT
TCAAATTGCTGGCCGCGCTGGGCGCCTGGATGGGCTGGAAAATGCTGCCAATCATTATCCTGTTTTCATCGCTGGTGGGA
GCGGCAGTCGGCCTTGCGCTGATCATATTCTTCCGTCACGGGCGCGACAAACCGATTCCTTTCGGCCCATATCTGGCCGC
TGCCGGCTTACTGGCCCTGCTCTATGGCCACACAATCATGGAAACTTATTTCGGTTTTGTTGCCTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (136-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

3D structure

• AlphaFold DB: A0A127QNI9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	56.458	94.097	0.531
pilD	Vibrio campbellii strain DS40M4	54.779	94.444	0.517
pilD	Acinetobacter baumannii D1279779	46.69	99.653	0.465
pilD	Acinetobacter nosocomialis M2	45.993	99.653	0.458
pilD	Neisseria gonorrhoeae MS11	51.181	88.194	0.451