Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   CFter6_RS21980 Genome accession   NZ_CP013232
Coordinates   5023046..5024278 (+) Length   410 a.a.
NCBI ID   WP_061541721.1    Uniprot ID   A0A127PHV8
Organism   Collimonas fungivorans strain Ter6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5018046..5029278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFter6_RS21960 (CFter6_4796) ispB 5018729..5019679 (+) 951 WP_150118924.1 octaprenyl diphosphate synthase -
  CFter6_RS21970 (CFter6_4798) - 5019892..5021181 (+) 1290 WP_014007896.1 HlyC/CorC family transporter -
  CFter6_RS21975 (CFter6_4800) pilB 5021305..5023029 (+) 1725 WP_014007897.1 type IV-A pilus assembly ATPase PilB Machinery gene
  CFter6_RS21980 (CFter6_4801) pilC 5023046..5024278 (+) 1233 WP_061541721.1 type II secretion system F family protein Machinery gene
  CFter6_RS21985 (CFter6_4802) pilD 5024278..5025144 (+) 867 WP_061541722.1 prepilin peptidase Machinery gene
  CFter6_RS21990 (CFter6_4803) coaE 5025151..5025804 (+) 654 WP_061541723.1 dephospho-CoA kinase -
  CFter6_RS21995 (CFter6_4804) zapD 5025935..5026690 (+) 756 WP_014007901.1 cell division protein ZapD -
  CFter6_RS22000 (CFter6_4805) - 5026712..5026900 (+) 189 WP_061541724.1 DNA gyrase inhibitor YacG -
  CFter6_RS22005 (CFter6_4806) mutT 5026920..5027333 (-) 414 WP_061541725.1 8-oxo-dGTP diphosphatase MutT -
  CFter6_RS22010 (CFter6_4807) - 5027330..5028205 (-) 876 WP_061541726.1 ATP-binding protein -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44688.67 Da        Isoelectric Point: 10.1422

>NTDB_id=160869 CFter6_RS21980 WP_061541721.1 5023046..5024278(+) (pilC) [Collimonas fungivorans strain Ter6]
MATAARSAASARQVKEWVYLWEGKDKKGKVVRGELRAGSETVVNVTMRRQGILVTKVKKKTFRSGKKISDKDISLFTRQL
ATMMKAGVPLLQSFDIVAKGHANPSVSKLVNDIRGDVETGTSLSQAFRKFPLYFDPLFCNLVGAGEQAGILEDLLERLAI
YKEKTLAIKGKIKSALFYPVSILAVAFVVTAVIMIWVVPAFKQVFSSFGADLPAPTMAVMAMSDFMVGNWYIIFPTIFAG
LYLFFQSWRRSLKMQRVMDRLLLKAPVFGDVIRKATIARWTRTLATMFAAGVPLVESLDSVGGASGNAVYLDATKKIQSE
VSTGTSLTAAMENANVFPNMVTQMVSIGEESGSLDQMLGKVADFYEAEVDDAVASLSSLMEPLIMVILGVLIGGLVVAMY
LPIFKLGSVV

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=160869 CFter6_RS21980 WP_061541721.1 5023046..5024278(+) (pilC) [Collimonas fungivorans strain Ter6]
ATGGCAACTGCCGCACGCAGCGCCGCAAGCGCACGTCAGGTCAAAGAGTGGGTATATCTTTGGGAGGGCAAGGATAAAAA
GGGCAAGGTGGTGCGCGGCGAACTGCGCGCCGGCAGCGAGACCGTGGTCAACGTCACCATGCGGCGCCAGGGGATCTTGG
TCACCAAGGTTAAAAAGAAGACCTTCCGCAGCGGGAAGAAAATTTCCGACAAGGATATCTCCCTGTTTACCCGCCAGCTG
GCTACCATGATGAAGGCCGGCGTGCCTTTGCTGCAGTCTTTTGACATCGTGGCCAAGGGCCATGCCAATCCGTCGGTGTC
GAAACTGGTCAATGACATCCGCGGCGATGTGGAGACCGGCACCAGCCTGAGCCAGGCGTTCCGCAAGTTTCCGCTGTATT
TCGACCCGTTGTTTTGCAACCTGGTTGGTGCTGGCGAACAGGCTGGTATTCTTGAGGACTTGCTGGAGCGGCTCGCGATC
TACAAGGAAAAAACCCTCGCAATTAAAGGCAAAATCAAATCCGCATTATTTTATCCAGTATCGATTCTGGCGGTAGCGTT
TGTCGTAACCGCGGTCATCATGATCTGGGTGGTGCCCGCTTTCAAACAGGTGTTTTCCAGCTTCGGCGCGGACTTGCCGG
CACCGACAATGGCGGTAATGGCAATGTCGGATTTCATGGTGGGCAACTGGTACATCATCTTCCCAACCATATTTGCCGGC
TTATATTTATTCTTCCAGTCCTGGAGACGTTCGCTCAAAATGCAACGGGTCATGGATCGTTTATTGCTAAAAGCGCCGGT
TTTCGGCGACGTGATACGCAAAGCCACGATTGCGCGCTGGACTCGCACTTTGGCCACCATGTTTGCCGCCGGTGTACCAT
TGGTAGAGTCGCTTGACTCGGTAGGCGGCGCATCAGGCAATGCAGTCTATCTGGACGCCACCAAGAAGATCCAGAGCGAG
GTCAGTACCGGCACCAGTTTGACCGCAGCGATGGAAAACGCCAATGTATTCCCGAATATGGTGACGCAAATGGTTTCGAT
CGGCGAAGAGTCCGGCTCACTGGATCAAATGCTAGGTAAAGTAGCCGATTTCTACGAGGCTGAAGTGGATGACGCAGTAG
CCTCCCTGTCCAGCCTGATGGAACCCTTGATCATGGTGATCCTAGGCGTACTGATCGGCGGCCTGGTGGTTGCCATGTAC
TTGCCAATCTTCAAGTTAGGCTCGGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(280-402)

Type II secretion system (T2SS), protein F (T2SSF)

(76-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A127PHV8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.234

98.049

0.522
  pilG Neisseria gonorrhoeae MS11

53.518

97.073

0.52
  pilG Neisseria meningitidis 44/76-A

53.266

97.073

0.517
  pilC Legionella pneumophila strain ERS1305867

53.535

96.585

0.517
  pilC Acinetobacter baumannii D1279779

52.897

96.829

0.512
  pilC Acinetobacter baylyi ADP1

52.261

97.073

0.507
  pilC Vibrio campbellii strain DS40M4

40.494

98.78

0.4
  pilC Vibrio cholerae strain A1552

40.806

96.829

0.395
  pilC Thermus thermophilus HB27

36.627

100

0.371

Multiple sequence alignment