Detailed information NTG0160870

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: CFter6_RS21985
• Genome accession: NZ_CP013232
• Coordinates: 5024278..5025144 (+)
• Length: 288 a.a.
• NCBI ID: WP_061541722.1
• Uniprot ID: A0A127PIX1
• Organism: Collimonas fungivorans strain Ter6
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5019278..5030144

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CFter6_RS21970 (CFter6_4798)	-	5019892..5021181 (+)	1290	WP_014007896.1	HlyC/CorC family transporter	-
CFter6_RS21975 (CFter6_4800)	pilB	5021305..5023029 (+)	1725	WP_014007897.1	type IV-A pilus assembly ATPase PilB	Machinery gene
CFter6_RS21980 (CFter6_4801)	pilC	5023046..5024278 (+)	1233	WP_061541721.1	type II secretion system F family protein	Machinery gene
CFter6_RS21985 (CFter6_4802)	pilD	5024278..5025144 (+)	867	WP_061541722.1	prepilin peptidase	Machinery gene
CFter6_RS21990 (CFter6_4803)	coaE	5025151..5025804 (+)	654	WP_061541723.1	dephospho-CoA kinase	-
CFter6_RS21995 (CFter6_4804)	zapD	5025935..5026690 (+)	756	WP_014007901.1	cell division protein ZapD	-
CFter6_RS22000 (CFter6_4805)	-	5026712..5026900 (+)	189	WP_061541724.1	DNA gyrase inhibitor YacG	-
CFter6_RS22005 (CFter6_4806)	mutT	5026920..5027333 (-)	414	WP_061541725.1	8-oxo-dGTP diphosphatase MutT	-
CFter6_RS22010 (CFter6_4807)	-	5027330..5028205 (-)	876	WP_061541726.1	ATP-binding protein	-
CFter6_RS22015 (CFter6_4808)	argJ	5028346..5029584 (-)	1239	WP_061541727.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31142.05 Da
• Isoelectric Point: 7.7371

>NTDB_id=160870 CFter6_RS21985 WP_061541722.1 5024278..5025144(+) (pilD) [Collimonas fungivorans strain Ter6]
MQDGIFFLAAGSLLPTALAAVFGLLIGSFLNVVIHRLPVMMQRESDNYVAHESGKPLPHTERYNLVVPRSACTQCKHQIG
ALENVPILSYLALRGKCAACKTPISMRYPLVEALTGALSALLIWHFGSGWVGLATLVFVYLLIAMTFIDADTQLLPDDLT
LPLLWIGLLLNLSGLFVPLQDAVIGAAAGYLSLWAIYWAFKLLTGKEGMGYGDFKLLAALGAWLGWKMLPIVILFSSLVG
AAVGIILIVFARRGRDNPIPFGPYLAAAGLLALLYGQTILETYFGFAT

Nucleotide

• Length: 867 bp

>NTDB_id=160870 CFter6_RS21985 WP_061541722.1 5024278..5025144(+) (pilD) [Collimonas fungivorans strain Ter6]
ATGCAAGACGGGATTTTTTTCCTGGCGGCGGGGAGCCTGCTTCCCACCGCGCTGGCAGCTGTTTTTGGATTATTGATCGG
CAGTTTCCTGAATGTAGTGATTCACAGGCTGCCGGTCATGATGCAGCGCGAATCGGATAATTACGTCGCCCACGAAAGCG
GCAAGCCGCTGCCGCATACCGAGCGCTACAACCTGGTGGTTCCGCGCTCGGCTTGCACACAATGCAAACACCAGATCGGC
GCGCTCGAGAATGTGCCGATCTTGAGTTACTTGGCCTTGCGCGGCAAATGCGCAGCCTGCAAAACCCCCATCTCGATGCG
CTATCCTCTGGTCGAGGCATTGACCGGAGCGCTGTCGGCCCTGCTCATCTGGCACTTCGGCAGCGGCTGGGTCGGCCTGG
CGACCCTGGTTTTCGTCTATCTGCTGATCGCGATGACGTTTATCGACGCCGATACCCAGTTGCTGCCGGACGACCTGACC
CTGCCGCTGCTCTGGATAGGCCTGCTGCTGAACCTGTCCGGCCTGTTCGTGCCTTTACAGGACGCCGTGATCGGCGCCGC
GGCAGGCTACCTGAGCCTGTGGGCGATTTACTGGGCATTCAAGCTGCTGACCGGCAAGGAAGGCATGGGCTATGGCGATT
TCAAGCTGCTGGCGGCGCTTGGCGCCTGGCTGGGCTGGAAGATGCTGCCCATCGTCATCTTGTTTTCATCATTGGTGGGC
GCGGCAGTCGGGATCATATTGATCGTTTTTGCCCGCCGCGGACGCGACAATCCCATCCCCTTCGGCCCCTACCTGGCCGC
CGCCGGCCTGCTGGCCCTGCTCTACGGTCAAACAATTCTGGAAACTTATTTCGGTTTTGCTACCTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

3D structure

• AlphaFold DB: A0A127PIX1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	56.296	93.75	0.528
pilD	Vibrio campbellii strain DS40M4	54.044	94.444	0.51
pilD	Neisseria gonorrhoeae MS11	53.937	88.194	0.476
pilD	Acinetobacter baumannii D1279779	47.222	100	0.472
pilD	Acinetobacter nosocomialis M2	46.875	100	0.469