Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PP2015_RS02930 Genome accession   NZ_CP013187
Coordinates   658330..659565 (-) Length   411 a.a.
NCBI ID   WP_058028857.1    Uniprot ID   A0A0S2JYL6
Organism   Pseudoalteromonas phenolica strain KCTC 12086     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 653330..664565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PP2015_RS02905 (PP2015_568) - 654062..654502 (+) 441 WP_058028852.1 Spy/CpxP family protein refolding chaperone -
  PP2015_RS02910 (PP2015_569) yacG 654603..654842 (-) 240 WP_058028853.1 DNA gyrase inhibitor YacG -
  PP2015_RS02915 (PP2015_570) pilB 654944..656626 (-) 1683 WP_058028854.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PP2015_RS02920 (PP2015_571) coaE 656764..657372 (-) 609 WP_058028855.1 dephospho-CoA kinase -
  PP2015_RS02925 (PP2015_572) pilD 657404..658294 (-) 891 WP_058028856.1 prepilin peptidase Machinery gene
  PP2015_RS02930 (PP2015_573) pilC 658330..659565 (-) 1236 WP_058028857.1 type II secretion system F family protein Machinery gene
  PP2015_RS02935 (PP2015_574) - 659617..660117 (-) 501 WP_058028858.1 pilin -
  PP2015_RS02940 (PP2015_575) nadC 660680..661546 (-) 867 WP_058028859.1 carboxylating nicotinate-nucleotide diphosphorylase -
  PP2015_RS02945 (PP2015_576) ampD 661688..662245 (+) 558 WP_405127322.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  PP2015_RS02950 (PP2015_577) ampE 662253..663104 (+) 852 WP_058028860.1 beta-lactamase regulator AmpE -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 44559.41 Da        Isoelectric Point: 9.5447

>NTDB_id=160504 PP2015_RS02930 WP_058028857.1 658330..659565(-) (pilC) [Pseudoalteromonas phenolica strain KCTC 12086]
MKKDKDTADKLDTFVWTGLSARGKKLEGEMTGTSIALVKAQLRKQGITPSKVKRKPKPLFGIGAGGQKITAKDIAIFTRQ
IATMLTAGVPLIQSLEMISSGAKNKSLSKLIGGIADEVKAGQPLAKSLRAYPRYFDELYCDLIHSGEQSGALDKIFDRVA
VYKEKAEALKSKIKKAMFYPIAVVVVALIVTSILLIFVVPQFQDIFSSFGAELPAFTLFVIGISEFMQEAWWVFLLVIGV
SIYSYKEALIRSPAARHFNDRLVLQLPVVGMILHKAAVARYARTLSTTFAAGVPLVDALDSAAGASGNVIYKNAITEIKA
EVSSGNQMNWAMRNSKLFPDMVIQMVSIGEESGSLDGMLEKVANIYEQEVDDAVDGLSSLLEPLIMSVLAVLVGGLIIAM
YLPIFQLGSVV

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=160504 PP2015_RS02930 WP_058028857.1 658330..659565(-) (pilC) [Pseudoalteromonas phenolica strain KCTC 12086]
ATGAAAAAAGATAAAGATACCGCAGATAAACTCGATACCTTCGTTTGGACTGGTTTAAGCGCCCGAGGCAAAAAACTCGA
AGGTGAAATGACTGGTACTAGTATTGCCCTTGTTAAAGCCCAGCTTCGTAAGCAAGGTATTACCCCCTCAAAAGTAAAAC
GTAAGCCTAAACCTTTATTTGGTATAGGTGCCGGCGGTCAAAAGATCACCGCCAAAGACATTGCGATTTTCACTCGCCAA
ATTGCCACCATGTTGACTGCAGGCGTACCGCTTATCCAGTCTTTAGAAATGATTTCATCTGGGGCAAAGAATAAAAGTTT
AAGTAAACTCATTGGCGGCATTGCCGATGAAGTTAAAGCAGGTCAGCCGTTGGCAAAATCACTCCGTGCTTACCCGCGTT
ATTTTGATGAGCTCTATTGCGATCTCATTCACTCAGGGGAACAATCGGGTGCTCTTGATAAAATTTTTGACCGTGTTGCC
GTTTATAAAGAAAAAGCCGAGGCGTTAAAGTCAAAAATTAAAAAAGCCATGTTCTACCCTATTGCGGTAGTCGTAGTCGC
ACTCATTGTCACGTCGATCTTACTTATTTTCGTAGTACCACAATTCCAAGACATTTTTAGCAGTTTTGGGGCTGAACTGC
CTGCGTTTACCTTATTCGTTATTGGTATCTCGGAGTTTATGCAAGAAGCTTGGTGGGTGTTCTTATTGGTTATTGGTGTG
AGTATCTATTCTTATAAAGAAGCTTTGATCCGCTCACCAGCAGCACGCCACTTTAACGATCGTCTAGTACTACAATTACC
CGTTGTAGGTATGATTTTACACAAAGCCGCTGTAGCACGTTACGCACGTACACTATCGACGACATTTGCTGCAGGTGTAC
CACTGGTTGACGCACTTGATTCAGCCGCAGGCGCATCGGGCAACGTCATATATAAAAATGCCATTACCGAAATCAAAGCC
GAAGTCAGCTCGGGTAACCAAATGAACTGGGCGATGCGTAATTCAAAGCTCTTTCCTGATATGGTGATACAAATGGTCTC
TATTGGCGAAGAATCAGGCTCTCTTGATGGCATGTTAGAAAAAGTCGCCAATATTTACGAACAAGAAGTCGATGATGCAG
TTGATGGTCTATCTAGTCTGCTTGAGCCGTTAATTATGAGTGTGCTTGCTGTGCTTGTTGGTGGTCTTATTATTGCCATG
TATTTACCTATCTTCCAACTGGGCTCAGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(282-403)

Type II secretion system (T2SS), protein F (T2SSF)

(77-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0S2JYL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

61.692

97.81

0.603
  pilC Acinetobacter baylyi ADP1

56.11

97.567

0.547
  pilC Legionella pneumophila strain ERS1305867

54.657

99.27

0.543
  pilC Acinetobacter baumannii D1279779

54.455

98.297

0.535
  pilC Vibrio campbellii strain DS40M4

43.873

99.27

0.436
  pilC Vibrio cholerae strain A1552

43.035

97.81

0.421
  pilG Neisseria meningitidis 44/76-A

41.975

98.54

0.414
  pilG Neisseria gonorrhoeae MS11

41.728

98.54

0.411

Multiple sequence alignment