Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BBP08_RS03415 Genome accession   NZ_CP016501
Coordinates   671826..672506 (+) Length   226 a.a.
NCBI ID   WP_000274751.1    Uniprot ID   Q3K0Z6
Organism   Streptococcus agalactiae strain WC1535     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 666826..677506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBP08_RS03395 (BBP08_03260) - 667371..668192 (+) 822 WP_000593346.1 Cof-type HAD-IIB family hydrolase -
  BBP08_RS03400 (BBP08_03265) - 668293..668907 (+) 615 WP_000895132.1 SGNH/GDSL hydrolase family protein -
  BBP08_RS03405 (BBP08_03270) - 669067..670506 (+) 1440 WP_000989483.1 6-phospho-beta-glucosidase -
  BBP08_RS03410 (BBP08_03275) - 670597..671730 (+) 1134 WP_000667246.1 AI-2E family transporter -
  BBP08_RS03415 (BBP08_03280) radC 671826..672506 (+) 681 WP_000274751.1 DNA repair protein RadC Machinery gene
  BBP08_RS03420 (BBP08_03285) - 672519..673157 (-) 639 WP_000605175.1 redox-sensing transcriptional repressor Rex -
  BBP08_RS03425 (BBP08_03290) - 673312..673659 (-) 348 WP_000863504.1 DUF1831 domain-containing protein -
  BBP08_RS03430 (BBP08_03295) - 673661..674776 (-) 1116 WP_000639608.1 cysteine desulfurase family protein -
  BBP08_RS03435 (BBP08_03300) - 674780..675754 (-) 975 WP_000840702.1 ribose-phosphate diphosphokinase -
  BBP08_RS03440 (BBP08_03305) - 675930..676502 (-) 573 WP_000149082.1 CYTH domain-containing protein -
  BBP08_RS03445 (BBP08_03310) - 676612..677283 (+) 672 WP_000061344.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25841.15 Da        Isoelectric Point: 8.6567

>NTDB_id=160504 BBP08_RS03415 WP_000274751.1 671826..672506(+) (radC) [Streptococcus agalactiae strain WC1535]
MYHIELKKEALLPRERLVDLGADRLSNQELLAILLRTGIKEKPVLEISTQILENISSLADFGQLSLQELQSIKGIGQVKS
VEIKAMLELAKRIHKAEYDRKEQILSSEQLARKMMLELGDKKQEHLVAIYMDTQNRIIEQRTIFIGTVRRSVAEPREILH
YACKNMATSLIIIHNHPSGSPKPSESDLSFTKKIKRSCDHLGIVCLDHIIVGKNKYYSFREEADIL

Nucleotide


Download         Length: 681 bp        

>NTDB_id=160504 BBP08_RS03415 WP_000274751.1 671826..672506(+) (radC) [Streptococcus agalactiae strain WC1535]
ATGTACCATATTGAATTAAAAAAGGAAGCTTTACTACCAAGAGAACGCCTAGTTGATTTAGGCGCAGATAGATTGAGTAA
TCAGGAGTTATTAGCCATTCTCTTACGTACAGGTATTAAAGAAAAACCTGTTCTGGAAATTTCAACACAAATTTTAGAAA
ACATAAGCAGTTTAGCAGATTTTGGTCAATTATCCTTACAGGAGTTGCAATCCATTAAAGGAATCGGTCAGGTTAAATCC
GTCGAAATAAAAGCTATGCTAGAACTAGCAAAACGGATTCACAAAGCTGAATATGATCGTAAAGAGCAAATTTTAAGTAG
TGAACAATTAGCGAGGAAAATGATGCTCGAATTAGGGGATAAAAAACAAGAACATTTAGTAGCTATTTATATGGATACAC
AAAATCGTATTATCGAACAGAGAACTATTTTTATTGGTACTGTACGTCGTTCAGTAGCAGAGCCAAGAGAAATTCTACAT
TATGCTTGTAAAAACATGGCAACTTCTTTGATTATCATACATAATCATCCCTCAGGTTCTCCAAAGCCCAGTGAAAGTGA
TTTAAGTTTCACTAAAAAAATAAAACGATCATGTGATCATCTGGGAATTGTCTGCCTAGATCACATCATCGTTGGAAAAA
ATAAATATTATAGTTTTCGAGAAGAAGCAGATATTTTATAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(12-80)

RadC-like JAB domain (RadC)

(106-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3K0Z6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus pneumoniae TIGR4

59.292

100

0.593
  radC Streptococcus pneumoniae R6

58.85

100

0.589
  radC Streptococcus pneumoniae D39

58.85

100

0.589
  radC Streptococcus gordonii str. Challis substr. CH1

58.85

100

0.589
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

42.654

93.363

0.398

Multiple sequence alignment