Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   AR383_RS08750 Genome accession   NZ_CP013021
Coordinates   1878284..1879534 (+) Length   416 a.a.
NCBI ID   WP_055732786.1    Uniprot ID   -
Organism   Agarivorans gilvus strain WH0801     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1873284..1884534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AR383_RS08725 ampE 1873300..1874154 (-) 855 WP_055732782.1 regulatory signaling modulator protein AmpE -
  AR383_RS08730 ampD 1874232..1874771 (-) 540 WP_083481554.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  AR383_RS08735 nadC 1874948..1875790 (+) 843 WP_055732783.1 carboxylating nicotinate-nucleotide diphosphorylase -
  AR383_RS22010 - 1876031..1876483 (+) 453 WP_055732784.1 pilin -
  AR383_RS08745 pilB 1876491..1878197 (+) 1707 WP_055732785.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AR383_RS08750 pilC 1878284..1879534 (+) 1251 WP_055732786.1 type II secretion system F family protein Machinery gene
  AR383_RS08755 pilD 1879537..1880415 (+) 879 WP_055732787.1 prepilin peptidase Machinery gene
  AR383_RS08760 coaE 1880415..1881017 (+) 603 WP_055732788.1 dephospho-CoA kinase -
  AR383_RS08765 zapD 1881076..1881816 (+) 741 WP_055732789.1 cell division protein ZapD -
  AR383_RS08770 yacG 1881816..1882016 (+) 201 WP_055732790.1 DNA gyrase inhibitor YacG -
  AR383_RS08775 mutT 1882013..1882423 (-) 411 WP_055732791.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45419.24 Da        Isoelectric Point: 9.8387

>NTDB_id=159303 AR383_RS08750 WP_055732786.1 1878284..1879534(+) (pilC) [Agarivorans gilvus strain WH0801]
MATASNSSKRKVVVKKINAYTWSGVNRKGGKVSGEYQAENPNQVKGELRRQGITVTKIKKKSESFLSKMGNKIKPMDIAV
ASRQIATMLQAGVPLVQSFNIISKSVEKPAMRELIGEVAAEVESGTALSESLRKHPRYFDALYCDLIEAGEQSGALETIY
DRVAIYKEKAEALKSKIKKAMFYPVSVIIVAIIVTTILLLFVIPQFEEIFASFGAELPAFTQFVIGISRFLQDYWPFIFG
GIFALGFGYVQAFRRSQGVKDATDRFILRIPVINPILHKAAMARFARTLSTTFAAGIPLIDALKSASGASGNVVYRNAID
AIRIEVTGGMQMNVAMRTVNLFPDMVTQMVMIGEESGSLDSMLDKVANIYEQQVDDAVDGLTSLIEPLIMAVLGVLVGGM
VVAMYLPIFKLGSVVG

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=159303 AR383_RS08750 WP_055732786.1 1878284..1879534(+) (pilC) [Agarivorans gilvus strain WH0801]
ATGGCTACCGCAAGCAACAGCAGCAAACGCAAGGTCGTAGTAAAAAAAATTAACGCCTACACTTGGAGCGGAGTAAACCG
CAAAGGCGGCAAGGTGAGCGGCGAATACCAAGCCGAAAACCCCAATCAGGTGAAAGGCGAGCTACGCCGCCAGGGCATTA
CCGTTACCAAGATTAAAAAGAAAAGCGAAAGCTTTCTTAGCAAGATGGGTAACAAGATTAAACCCATGGACATCGCGGTG
GCCTCGCGACAAATTGCCACCATGCTACAAGCCGGCGTGCCCTTAGTACAAAGCTTCAACATCATCTCTAAAAGTGTAGA
AAAACCAGCGATGCGTGAGCTGATAGGTGAAGTAGCCGCCGAAGTAGAATCAGGTACTGCGCTTTCTGAGAGCCTACGCA
AGCATCCACGCTATTTCGATGCTCTATATTGCGACTTAATTGAAGCCGGTGAGCAAAGTGGTGCTCTTGAAACCATCTAT
GATCGCGTCGCCATCTATAAAGAAAAGGCCGAAGCACTAAAATCGAAAATTAAGAAAGCCATGTTTTACCCAGTTTCGGT
GATTATTGTAGCGATCATTGTCACCACCATTCTGTTACTATTTGTCATTCCCCAATTTGAAGAAATCTTTGCCAGCTTTG
GCGCCGAACTGCCTGCCTTTACTCAGTTTGTTATCGGCATTTCCCGCTTCTTGCAAGACTACTGGCCGTTTATTTTTGGC
GGTATATTTGCCTTGGGTTTTGGTTATGTGCAAGCCTTTAGGCGCTCGCAGGGGGTGAAAGATGCCACCGACCGCTTCAT
TCTTAGGATTCCGGTGATTAACCCAATTCTGCACAAGGCGGCAATGGCCCGTTTTGCGCGCACCCTCTCCACCACCTTTG
CCGCCGGTATTCCACTGATTGATGCGCTAAAATCGGCCTCTGGCGCATCTGGCAACGTAGTCTACCGCAACGCCATCGAT
GCGATTCGCATTGAGGTAACCGGTGGTATGCAAATGAACGTAGCCATGCGCACAGTAAATTTGTTTCCCGACATGGTCAC
CCAAATGGTCATGATTGGTGAAGAATCCGGCTCTTTAGACAGTATGTTGGATAAAGTGGCCAATATTTACGAACAACAAG
TCGACGATGCGGTTGACGGTTTAACCAGCCTAATTGAACCGCTGATTATGGCCGTGCTTGGCGTGCTGGTTGGTGGTATG
GTGGTGGCCATGTACTTACCTATCTTTAAACTCGGCTCTGTTGTGGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(285-407)

Type II secretion system (T2SS), protein F (T2SSF)

(82-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.75

96.154

0.546
  pilC Acinetobacter baylyi ADP1

55.416

95.433

0.529
  pilC Acinetobacter baumannii D1279779

54.408

95.433

0.519
  pilC Legionella pneumophila strain ERS1305867

51.768

95.192

0.493
  pilC Vibrio campbellii strain DS40M4

45.567

97.596

0.445
  pilC Vibrio cholerae strain A1552

45.161

96.875

0.437
  pilG Neisseria meningitidis 44/76-A

42.402

98.077

0.416
  pilG Neisseria gonorrhoeae MS11

42.365

97.596

0.413
  pilC Thermus thermophilus HB27

38.5

96.154

0.37

Multiple sequence alignment